BAC Information

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BAC

Clone NameMSMg01-143E02
Chromosome14 (Build37)
Map Location 20,534,130 - 20,534,332
singlet/doubletsinglet
Overlap genenone
Upstream geneUbe2e2, LOC627741, LOC100042299, LOC675069, LOC100042322, LOC632470, EG632477, EG632498, EG667341, LOC667344, LOC619996, EG434616, LOC675165, 1700110I01Rik, EG664814, LOC100039452, LOC100038983, LOC100039441, EG432825, LOC673583, EG664855
Downstream geneNid2, 2700060E02Rik, LOC100039534, Gng2, 1810063B07Rik, Kcnk5, LOC100039106, Kcnk16, Nudt13, Ecd, AA536717, Dnajc9, Mrps16, Ttc18, Anxa7, Zmynd17, Ppp3cb, Usp54, Myoz1, Synpo2l, Sec24c, Fut11, Chchd1, 2310021P13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-143E02.T7 (MSMg01no143_e02.b1)MSMg01-143E02.TJ (MSMg01no143_e02.g1)
ACCAG347655AG347656
length660708
length of high quality
(start - end)
204 (67 - 270)219 (69 - 287)
definitionCHROMAT_FILE: MSMg01no143_e02.b1 PHD_FILE: MSMg01no143_e02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:03:46 2005CHROMAT_FILE: MSMg01no143_e02.g1 PHD_FILE: MSMg01no143_e02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:03:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATCAAAATTTGCGGCGCTAAACGACTCCTAATGCGAGAGAAGCCGCGGA
ATTCTAGAATCTACGAACTGACTGTGTTTGTACTACAAAAAAAATCAGTA
AATGTCATAAATCAGTTCTCTTTTCTTTGAAGAACCAATTATTAAACATT
TACAAGCACCAAGACAAACCATATAACTATTCAAGGAAAAAATCAGGGAC
AACTATAGAGCAAACCTGACAGAAATTCAAAAGTATACAAACACAGGCAC
CAGGACTTCCCTTTTCCTACCCCAGTCATACTGCATGAGCACCAGGGCCT
CTGAAAACACAACTTCATCACATGCCTTGGGTTCAAGTTCGGGCCCCGGA
ACCCCCCCCCTCGGTATTTTTTTTTTTTATTCTTCCCGCTTTTAGACACC
TTTTGTCTGTAAATCTCCTAATGGTAAGGCGGAACTATTTATCTTCGCCT
AAATTACGTCGTTTCCAGTACCCACCAGCCCATTCGTTGTTAAATAAAAT
AATTGTTTAACCCGCCGTCTTAAATGTACCTCGCAACCACATATAAAAGA
AATATTCCGCCACGCCCGTCAGATTATCTACACCGCAACATCTTATATCC
CACCCCACAACAGACGTGCGTTTTACACAATATCTTCCCCAACTACACAA
AATATAGCTT
CCGATGAAGTGTGAGGCCTGGCGAGCGCCTGGTTTCAAAATATAGGTGAA
CTATAGAAGTATCCCGAAATTCACTTTGTAGACCAGGCTGGCCTGGAACT
CAGAAATCTGCCTATCTCTGCCTCCTGAGTGCCAGGATTAAAGGCATGGG
CCACCATGCCCGGCTCCAGTGGTTCTCAACCTTCCCAATGATGCAACTCT
TTAATACAGCTCTGCATAATGTGATGATCTCCTACCATAAAGTTATTTTC
TCTGCTACTCCATAACTATAATTTTGCTACTGTTACCAACTATACTGCAC
ATATTTTTTGGAGCTATATTATTGCAAAAAGGATTGTGACCTGCAGATTG
ATAGCTGTTGTTACTCACCTGAATCCTATGTCAGCTGAGCATGTATCATC
AGATCCTGTGCCCACCACTAATATGCATATAAACCACGAATGCTGACCAC
CTCCGTTTTTTATTAAAATCATATGCGTGCGCAAATCATTACACCGCATC
ATTTATCTCCTATAATCAACTTACCCATGTATTTTTACCCGCCCCACCTT
TTTATTGTCCTTCTCGCCCCCTGCATCCCTACCCTCCATTACTTCGCAAC
ATATCAATTTGGTTTATTTTTTCTCTTTTATCCTCTTGACAGACCTGACA
AAACGCTATTCTACATGCTATGCCTATATTATGAAATAACATTGTTTTTT
TTCTCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no143_e02.b1 MSMg01no143_e02.b1 CHROMAT_FILE:
MSMg01no143_e02.b1 PHD_FILE: MSMg01no143_e02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:03:46 2005
         (204 letters)



>mm_chr14_20533930_20534532
          Length = 603

 Score =  364 bits (188), Expect = e-105
 Identities = 200/204 (98%), Gaps = 1/204 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgactgtgtttgtactacaaaaaaaatcagtaaatgtcataaatcagttctcttttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actgactgtgtttgtactacaaaaaaaatcagtaaatgtcataaatcagttctcttttct 260

                                                                       
Query: 61  ttgaagaaccaattattaaacatttacaagcaccaagacaaaccatataactattcaagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgaagaaccaattattaaacatttacaagcaccaagacaaaccatataactattcaagg 320

                                                                       
Query: 121 aaaaaatcagggacaactatagagcaaacctgacagaaattcaaaagtatacaaacacag 180
           |||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 321 aaaaaatcagagacaactatagagaaaacctgacagaaattcgaaagtatacaaacacag 380

                                   
Query: 181 gcaccaggacttcccttttcctac 204
           |||||||||||||||||| |||||
Sbjct: 381 gcaccaggacttcccttt-cctac 403


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 204
Length of database: 603
Length adjustment: 8
Effective length of query: 196
Effective length of database: 595
Effective search space:   116620
Effective search space used:   116620
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)