BAC Information

Click to search

BAC

Clone NameMSMg01-143G14
Chromosome14 (Build37)
Map Location 60,999,313 - 60,999,845
singlet/doubletsinglet
Overlap gene2600011E07Rik
Upstream geneEG628705, Setdb2, Cab39l, Cdadc1, Tmem46, Atp8a2, LOC668162, LOC628768, Nupl1, Mtmr6
Downstream genePpia-ps14_696.1, EG628836, Spata13, C1qtnf9, Mipep, LOC100043586, Tnfrsf19, Sacs, Sgcg, Arl11, EG432864, Ebpl, Kpna3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-143G14.T7 (MSMg01no143_g14.b1)MSMg01-143G14.TJ (MSMg01no143_g14.g1)
ACCAG347763AG347764
length687682
length of high quality
(start - end)
345 (71 - 415)525 (75 - 599)
definitionCHROMAT_FILE: MSMg01no143_g14.b1 PHD_FILE: MSMg01no143_g14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:03:58 2005CHROMAT_FILE: MSMg01no143_g14.g1 PHD_FILE: MSMg01no143_g14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:03:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTATAGATGCCTTATTAGGAATTTAAAAACCATCCATTTGTCTACG
TAGCAACACTACAAGACAGTACATCATAGATCTGCAGGAAATCTGTTCAG
TAGGGTGGGCTAATGCCTAGGGATTATATTAGTTTAATAATGACAGGAAA
GGCATATTGATAGCAAGAATCAATCCTGAAATGAAGTCTCCCGGCCTTGC
CTCCAAGAGCTCGCCTATCACAGTCCATTAAAAAAAAATGGTAGGCCATC
TCCAGGAAAGTCATAAAGTCTTCTTTAACCTATCTATTCTAGATGGCTTT
TGCCATTATACTACGCAGGATCTATGACTTACACGAATACAGCAGGCATC
TGTGTAACACAGTCACCAACACCCTCTTTGACTTCTAGCCTAGAAGGTGC
CCAAGCCTCTCATATAACCTCGTTTTTCTGGAACCTCCTTGAACTCTTCA
GCCACATTCTCTCGTCCCATTATTTAATGTTAATTTCATGCCAGATGCTT
AATGTTTCCTGAATAAGAAAGTATTATATTTTTTCCCTCTTTTTCGTGTA
CTTTTTCATTTCCACTTTTTTTTTTCCATCCCTCACAACCCCTCTCTTTT
TATCTCATATTTTTCACTTCTTTTAGATTTGTTTTTT
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTTCTAGCGCCTTCCCTTTTCTTTT
AACCTTTACAGAAGATCTGGGCTTCCTTCTCCTCCTCTTCCTCCTCTTCC
TCCTCCTCCTCTTCCTCCTCCTTCTCCTCCTTCTTCCTTAATTCATGGAT
CATTCAGAAGTCACCTTTCTTTGCCTTTGCAGAAAATAAGATTTAACCAA
ATCTAACAAAAAAAAAATCCCACCAGGATATCAGGCTGTTCTAGATTCAA
GAGGGCCTTGCGGAGTCACTGAACAACAGGATTCTTGCCTTTCTTTCCAG
GAAAGAAAAAAAAAATAAAAAAGAACTTCGCTTTATCACTGTGTGGAAAA
CACCTCAAAGCTAAAGCCCCACGTAGCTGTGTGACTAGACCAGGGGGCTG
CTGACCTGCAGAAAGCCCCCAGCTTCCAATGCCAGATATGCAAATAGGGA
AGGAAAGCTCTATCTCTAGGAAGAAAACAGAGGTTTAGTATGGCTGGCTC
AGATCGTTTGTCTGAGGAGAAATAAAAGGCTCACGAGTAGTTTATGTGTT
TTTTGTTTGTTCGTCTGCCCGCTTCTTCTTCCCCCCCCCCCTCCCCCCCC
TCCTCATATCATGATCTCAATTTTTGTGGGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no143_g14.g1 MSMg01no143_g14.g1 CHROMAT_FILE:
MSMg01no143_g14.g1 PHD_FILE: MSMg01no143_g14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:03:58 2005
         (525 letters)



>mm_chr14_60999113_61000045
          Length = 933

 Score =  969 bits (501), Expect = 0.0
 Identities = 522/533 (97%), Gaps = 8/533 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttctagcgccttcccttttcttttaacctttacagaagatctgggcttccttctcctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttctagcgccttcccttttcttttaacctttacagaagatctgggcttccttctcctc 260

                                                                       
Query: 61  ctcttcctcctcttcctcctcctcctcttcctcctccttctcctccttcttccttaattc 120
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 261 ctcttcctcctcttcctcctcctcctcctcctcctccttctcctccttcttccttaattc 320

                                                                       
Query: 121 atggatcattcagaagtcacctttctttgcctttgcagaaaataagatttaaccaaatct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atggatcattcagaagtcacctttctttgcctttgcagaaaataagatttaaccaaatct 380

                                                                       
Query: 181 aacaaaaaaaaaa-----tcccaccaggatatcaggctgttctagattcaagagggcctt 235
           |||||||||||||     ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacaaaaaaaaaaaaaaatcccaccaggatatcaggctgttctagattcaagagggcctt 440

                                                                       
Query: 236 gcggagtcactgaacaacaggattcttgcctttctttccaggaaagaaaaaaaaaa---t 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |
Sbjct: 441 gcggagtcactgaacaacaggattcttgcctttctttccaggaaagaaaaaaaaaaaaat 500

                                                                       
Query: 293 aaaaaagaacttcgctttatcactgtgtggaaaacacctcaaagctaaagccccacgtag 352
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 501 aaaaaagaacttcgctttatcactgtgtggaaaacacctcaaagctaaagctccatgtag 560

                                                                       
Query: 353 ctgtgtgactagaccagggggctgctgacctgcagaaagcccccagcttccaatgccaga 412
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgtgtgactagaccagggggctgctgacctgcagaaagcccccagcttccaatgccaga 620

                                                                       
Query: 413 tatgcaaatagggaaggaaagctctatctctaggaagaaaacagaggtttagtatggctg 472
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tatgcaaatagggaaggaaagctctatctctaggaagaaaacagaggtttagtatggctg 680

                                                                
Query: 473 gctcagatcgtttgtctgaggagaaataaaaggctcacgagtagtttatgtgt 525
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gctcagatcgtttgtctgaggagaaataaaaggctcacgagtagtttatgtgt 733


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 933
Length adjustment: 10
Effective length of query: 515
Effective length of database: 923
Effective search space:   475345
Effective search space used:   475345
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)