BAC Information

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BAC

Clone NameMSMg01-144J03
Chromosome14 (Build37)
Map Location 121,312,442 - 121,313,068
singlet/doubletsinglet
Overlap geneRanbp5
Upstream geneOxgr1, Gabarapl2-ps, LOC100043831, Mbnl2, Rap2a, LOC668835, LOC668837
Downstream geneFarp1, LOC100043837, Stk24, Slc15a1, LOC100043577, Dock9, LOC668843, Phgdhl1, Gpr18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-144J03.T7 (MSMg01no144_j03.b1)MSMg01-144J03.TJ (MSMg01no144_j03.g1)
ACCAG348610AG348611
length706704
length of high quality
(start - end)
624 (78 - 701)626 (79 - 704)
definitionCHROMAT_FILE: MSMg01no144_j03.b1 PHD_FILE: MSMg01no144_j03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:05:26 2005CHROMAT_FILE: MSMg01no144_j03.g1 PHD_FILE: MSMg01no144_j03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:05:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCGGGCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAATG
CGCGGAATTCTCACCTGATTTCACCGAATGGCAGAGAAGCACCTGAAAAA
ATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGA
GATTCCACCTCACACCAGTCAGAATGTCTAAGATCAAAAATTCAGGTGAC
AGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTG
GTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCCATCTGGCAGTTCC
TCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTG
GGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCAC
TATGTTCATAGCAGCCTTATTTATAATACCCAGAAGCTGGAAAGAACCCA
GATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACA
ATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGC
CAAATGGATGGACCTGAAGGGCATCATCCTGAGTGAGGTAACACATTCAC
AAAGGAACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCAAA
ACCTAGGATACCCAAGATATAAGATACAATTTCCTAAACACATGAAACTC
AAGAAA
CTTTTTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGAAAGCCAGGGCTACACAG
AGAAACCCTGTCTCAAACCTCTCCCCCACCCCCAAATAAAAGGAGAAACA
TTTTAGAAAATTTAAGTCTTTAGACCACTTCAACAAAATGTAACAATGTA
TGTTGTAACAATGTGAGTTACACTGTTCACCTCCTTGTAAGAGCAACAGT
GACCTTAGCCAGGACCCTGTAGACTAAGTATTTTTATTTTGGCTGAATAA
ATTTACAAATATATTCTCGGAGCCCATGCCAATTGTTCAGCTTCAATAAA
GTATTTTCATAGTTGTTTCATCTGACTTAGTATGTCCTCTTGTTTGGGTT
ACTTATAAATCTCCCCAAACAAATTGAGGAGCTTTTGTGCCTTTTTTTTT
TTTTTTGGAGTTTTTCTAGGAAGTTTTAGTTACAACTTACTATTATACCA
TATGGTATCAAGGACCACCCTGACCCCGAATTTGCTCTTTTGCCAAGTTA
AGAAAATTCAGTGTTGCAGTACTCACTTTCTATATACATTCTCAGGACGT
ATTAAGGAAAAACGTACTACCTAAATATCTCCACTAGGAATAGAGACAAA
GAGTACTTATTTCCGATTGTTCTTTATGAGAAAATGCGCTGAATGCTAAT
AACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no144_j03.g1 MSMg01no144_j03.g1 CHROMAT_FILE:
MSMg01no144_j03.g1 PHD_FILE: MSMg01no144_j03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:05:26 2005
         (626 letters)



>mm_chr14_121312203_121313229
          Length = 1027

 Score = 1158 bits (599), Expect = 0.0
 Identities = 620/627 (98%), Gaps = 1/627 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggaaagccagggctacacagagaaaccctgtctcaaacctctcccccacccccaaata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 866 caggaaagccagggctacacagagaaaccctgtctcaaacctctcccccacccccaaata 807

                                                                       
Query: 61  aaaggagaaacattttagaaaatttaagtctttagaccacttcaacaaaatgtaacaatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 aaaggagaaacattttagaaaatttaagtctttagaccacttcaacaaaatgtaacaatg 747

                                                                       
Query: 121 tatgttgtaacaatgtgagttacactgttcacctccttgtaagagcaacagtgaccttag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 tatgttgtaacaatgtgagttacactgttcacctccttgtaagagcaacagtgaccttag 687

                                                                       
Query: 181 ccaggaccctgtagactaagtatttttattttggctgaataaatttacaaatatattctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 ccaggaccctgtagactaagtatttttattttggctgaataaatttacaaatatattctc 627

                                                                       
Query: 241 ggagcccatgccaattgttcagcttcaataaagtattttcatagttgtttcatctgactt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 ggagcccatgccaattgttcagcttcaataaagtattttcatagttgtttcatctgactt 567

                                                                       
Query: 301 agtatgtcctcttgtttgggttacttataaatctccccaaacaaattgaggagcttttgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 agtatgtcctcttgtttgggttacttataaatctccccaaacaaattgaggagcttttgt 507

                                                                       
Query: 361 gcc-tttttttttttttttggagtttttctaggaagttttagttacaacttactattata 419
           ||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct: 506 gccttttttttttttttttggcgtttttctaggaagttttatttacaacttactattata 447

                                                                       
Query: 420 ccatatggtatcaaggaccaccctgaccccgaatttgctcttttgccaagttaagaaaat 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ccatatggtatcaaggaccaccctgaccccgaatttgctcttttgccaagttaagaaaat 387

                                                                       
Query: 480 tcagtgttgcagtactcactttctatatacattctcaggacgtattaaggaaaaacgtac 539
           ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| 
Sbjct: 386 tcagtgtcgcagtactcactttctatatacattctcaggacatattaaggaaaaacgtag 327

                                                                       
Query: 540 tacctaaatatctccactaggaatagagacaaagagtacttatttccgattgttctttat 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tacctaaatatctccactaggaatagagacaaagagtacttatttccgattgttctttat 267

                                      
Query: 600 gagaaaatgcgctgaatgctaataacg 626
           ||||||||||||||||||||| |||||
Sbjct: 266 gagaaaatgcgctgaatgctactaacg 240


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1027
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1017
Effective search space:   626472
Effective search space used:   626472
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)