BAC Information

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BAC

Clone NameMSMg01-144M24
Chromosome14 (Build37)
Map Location 38,122,999 - 38,123,423
singlet/doubletsinglet
Overlap genenone
Upstream geneGcap14, LOC100040341, LOC670331, Rgr, Lrrc21, Lrrc22, Pcdh21, 2610528A11Rik, Ghitm
Downstream geneLOC382871, LOC382872
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-144M24.T7 (MSMg01no144_m24.b1)MSMg01-144M24.TJ (MSMg01no144_m24.g1)
ACCAG348778AG348779
length711720
length of high quality
(start - end)
373 (43 - 415)431 (77 - 507)
definitionCHROMAT_FILE: MSMg01no144_m24.b1 PHD_FILE: MSMg01no144_m24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:05:44 2005CHROMAT_FILE: MSMg01no144_m24.g1 PHD_FILE: MSMg01no144_m24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:05:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCCGCGGA
ATTCTCACCTGAGCAATACCGAATGGCAGAGAAGCACTTGAAAAAATGTT
CAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTC
CACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAG
ATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGA
AGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGA
AAACTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCAT
ATATCCAGAAGATGCCCCAACAGGTAAGAAGGACACATGCTCCACTATGT
TCATAGCAGCCTTATCCACAATAGCCAGAAGCTGGAAAGAACCCAGATGC
CCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGA
GTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAAT
GGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAGA
AACTCACACAATATGTATTCACTGATAAGCGGATATTAGCCCCAAACCTA
GGATACCCAAGATATAAGATATAATTTGCTAAACACATGAAACTCAAGAA
GAATGAATACT
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTAGCTTCCCAGCTCCAAACTGCT
CATTCTGATGACACACCACCAGGAAAGTGGTCAGGACACCTCCTCCTCCT
CCTGTTATGCTTCCTTTGATCAGAAACACTTATCAGCTTCCATTTAAGTG
GCTTCCACTTATCCTTCCCAAAGGAAAAAGTCTAGGCAGAATGCTTTTTC
TGCTCCTCAGTGTGATCTACCCATTTTAATTACTTCAACAGATTTGAGAG
CAAACAATTGTAGTCTAAGACACTTAAAACCAAGAGTGTGAGGTAGGATA
AGGACAGAACTGCTGTGTGGAGGCCTCTGCGCTCTGAGGAGGCCCACATC
TTTCAGAGATGATGTCCCCCCCCAACAAAAAGCCCAGTAGTCAATACCTC
TGGGATGATTGTTATAGCCTTAGGTCTAGGTCCTTCAACAGTTAGAGCAA
GTCAGCATCTCTATTTCAAGATCTTTCCTCCTGACATCTTGACATTTCTT
TTCCAAAATTCTACTTCAACAGAGCCACAAGGCAGATGACTCATGTCCAA
GTGTCCTTGACCCATTCTCATGCTATACCATCAACCTTATAGAGTTGAGC
CCCCTTGTGAAACCCATATGACTGCTTCTGGCTAGACACCTTCATTTGCC
CTTTTCTCCCCCATTTTGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no144_m24.g1 MSMg01no144_m24.g1 CHROMAT_FILE:
MSMg01no144_m24.g1 PHD_FILE: MSMg01no144_m24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:05:44 2005
         (431 letters)



>mm_chr14_38122793_38123623
          Length = 831

 Score =  677 bits (350), Expect = 0.0
 Identities = 408/436 (93%), Gaps = 16/436 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttagcttcccagctccaaactgctcattctgatgacacaccaccaggaaagtggtcagga 60
           ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||
Sbjct: 207 ttagcttcccagctccaaactgctccttctgatgacacaccactaggaaagtggtcggga 266

                                                                       
Query: 61  cacctcctcctcctcctgttatgcttcctttgatcagaaacacttatcagcttccattta 120
           |||||||||||      |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 cacctcctcct------gttatgcttcctttgatcagaaacacttatcagcttccattta 320

                                                                       
Query: 121 agtggcttccacttatccttcccaaaggaaaaagtctaggcagaatgctttttctgctcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtggcttccacttatccttcccaaaggaaaaagtctaggcagaatgctttttctgctcc 380

                                                                       
Query: 181 tcagtgtgatctacccattttaattacttcaacagatttgagagcaaacaattgtagtct 240
           |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcagtgagatctacccgttttaattacttcaacagatttgagagcaaacaattgtagtct 440

                                                                       
Query: 241 aagacacttaaaaccaagagtgtgaggtaggataaggacagaactgctgtgtggaggcct 300
           ||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 441 aagccccttaaaaccaagagtgtgaggtaggataaggagagaactgctgtgtggaggcct 500

                                                                       
Query: 301 ctgcgctctgaggaggcccacatctttcagagatgatgtcccccccca-----acaaaaa 355
           ||||||||||||||| |||||||||||||||||||||||| |     |     |||||||
Sbjct: 501 ctgcgctctgaggagacccacatctttcagagatgatgtctc-----atgtgaacaaaaa 555

                                                                       
Query: 356 gcccagtagtcaatacctctgggatgattgttatagccttaggtctaggtccttcaacag 415
           ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct: 556 gcccagtagtcaatacctctgggatgattgttagagccttgggtctaggtccttcaacag 615

                           
Query: 416 ttagagcaagtcagca 431
           ||||||||||||||||
Sbjct: 616 ttagagcaagtcagca 631


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 831
Length adjustment: 9
Effective length of query: 422
Effective length of database: 822
Effective search space:   346884
Effective search space used:   346884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)