BAC Information

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BAC

Clone NameMSMg01-145F03
Chromosome14 (Build37)
Map Location 119,636,244 - 119,636,534
singlet/doubletsinglet
Overlap geneHs6st3
Upstream geneLOC100043825, EG668814, LOC435422, Abcc4, Cldn10, Dzip1, Dnajc3a, LOC100043828, Ugcgl2
Downstream geneLOC619601, EG621324, LOC100043830, Oxgr1, Gabarapl2-ps, LOC100043831
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-145F03.T7 (MSMg01no145_f03.b1)MSMg01-145F03.TJ (MSMg01no145_f03.g1)
ACCAG349154AG349155
length736695
length of high quality
(start - end)
177 (49 - 225)291 (79 - 369)
definitionCHROMAT_FILE: MSMg01no145_f03.b1 PHD_FILE: MSMg01no145_f03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:06:22 2005CHROMAT_FILE: MSMg01no145_f03.g1 PHD_FILE: MSMg01no145_f03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:06:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCCGTTTAGACCTGTATCCCATTTTTAACTGGATTATTGGTT
TTTTAATATCTAGTTTCTTGAATATATATCATATATACATATATGTATAT
ATAATGAGAATATATATTATATAGAGAAAATATATATTACATAGAGAAAA
TATATATTATGTATAACATATAGTCATTAATCATCACTACCCATATATAA
TCAGCCTTTAAACTTCTCGCCCCCTCTTTCCCCCCCTTCTTTTCTTTTTC
CTATTTCTTCTCCTGATTCTTTCTTGTCCCTTTTCCACCTCTTTTACATT
TTACTTTCACTTTTCTCTGCCTTCCCCACTCCTCTTTCCCCCACCCCCCC
CCCCCACCTCTTTTCTCTCTTTCCTCCCCTTTTCCCCTTCTTCCCTCTCT
CTTTTCCCTCTTTTCCCTCCCCTTCTCATACCTTTTTTCGTTGCCTTCTC
CGCTTTTCTCCCCCTACCCCTCCCCTTTTTTTCCTCTTCCCATTTTCATT
TCTCCCTTCTCCCTCTTTCCCTCTACACCCTATCCCCTCTCATCCTTTTC
TCCCTTCTCCTTTCTTCCCTTTTTTCCCCCGTTTTCTCCGTTTGGCCTTA
TTATCGGCTTATTTTCTTTCCCCTGTGCCCCCCCCCTTTCCCCCCCCCCA
CCCCTCCCCTTTGTTCCCTTATCTCCCTTTTTCCCC
CCTACGATGAAGTGNGAGGCCTGGNNGGCGCCTGTTTTCCGACGTGAGGT
GAACTATAGAAGTTTTCCAAGACTACAGTGCTAATTTCCTTCTCTCCATT
GATAACGAATACCTGCCAATGAGTCCATATTCACTAAGCATTCTTTTTTT
TTCCTGTCAGGTTTTTTTTCTAACATCCTAAATGTTGCATTAGTAAAGCG
GTATTGGCTGTGCACACTGATGTTTACAGCATGCAGTTAAGGATATAGGT
ACATGTCTTATTCAGGGTTTCTAATCCTGCACAAACATCATGACCAAGAA
GCAAGTTGGGGAGGAAAGGGTTTAAATGGTTTACACTTCCATGTTGCTGT
TCATCACCAAAGGAAGTCAGGACTGCAACTCAAGCAGGTCAGAAAGCAGG
AGCTGATACAGAAGCCATGGAGGGATGTTCTTTACTGGCTTGCCTCCCCT
GGCTTGCTCAGCCTGCTCTCTTATAGAACCCAAGACTACCAGCCCAGAGA
TGGTCCCACCCACAAGGGGCCTTTCCCCCTTGATCACTAATTGAGAAAAT
GCCTTACAGCTGGATCTCATGGAGGCATTTCCCCAACTGAACCTCTTTTC
TCTGTGGTAACTCCAGCTGTGTCAAGTTGACACATAACTAGCTACAACAG
TACCTACCTATTTTTCCCGTGAAATTTCCTCTTCTTTCAGAACCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no145_f03.g1 MSMg01no145_f03.g1 CHROMAT_FILE:
MSMg01no145_f03.g1 PHD_FILE: MSMg01no145_f03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:22 2005
         (291 letters)



>mm_chr14_119636044_119636734
          Length = 691

 Score =  509 bits (263), Expect = e-148
 Identities = 284/291 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgctaatttccttctctccattgataacgaatacctgccaatgagtccatattcactaag 60
           |||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||
Sbjct: 201 tgctaatttccttctctctattgataacgaatacctgccagtgagtctatattcactaag 260

                                                                       
Query: 61  cattctttttttttcctgtcaggttttttttctaacatcctaaatgttgcattagtaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cattctttttttttcctgtcaggttttttttctaacatcctaaatgttgcattagtaaag 320

                                                                       
Query: 121 cggtattggctgtgcacactgatgtttacagcatgcagttaaggatataggtacatgtct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cggtattggctgtgcacactgatgtttacagcatgcagttaaggatataggtacatgtct 380

                                                                       
Query: 181 tattcagggtttctaatcctgcacaaacatcatgaccaagaagcaagttggggaggaaag 240
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagtcagggtttctaatcctgcacaaacatcatgaccaagaagcaagttggggaggaaag 440

                                                              
Query: 241 ggtttaaatggtttacacttccatgttgctgttcatcaccaaaggaagtca 291
           ||||||  ||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggtttatttggcttacacttccatgttgctgttcatcaccaaaggaagtca 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)