BAC Information

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BAC

Clone NameMSMg01-145J12
Chromosome14 (Build37)
Map Location 23,610,929 - 23,611,392
singlet/doubletsinglet
Overlap gene1700112E06Rik
Upstream geneSamd8, Vdac2, Comtd1, Zfp503, EG665075, EG435392, LOC665068
Downstream geneKcnma1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-145J12.T7 (MSMg01no145_j12.b1)MSMg01-145J12.TJ (MSMg01no145_j12.g1)
ACCAG349356AG349357
length685702
length of high quality
(start - end)
---466 (70 - 535)
definitionCHROMAT_FILE: MSMg01no145_j12.b1 PHD_FILE: MSMg01no145_j12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:06:43 2005CHROMAT_FILE: MSMg01no145_j12.g1 PHD_FILE: MSMg01no145_j12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:06:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCAAATTTGCGGCGCTAAACGACTCCTTTTCCGGACCGCCGCGGAANCC
NGACTTTCCGCACGGCGGANGAANGGGNGNGGANCCGCCAAACGCCCNNC
NGCNCCAACCCGAAGNCANGNGGNNNNNGCNNNGAGNCAGNNNNAAAGNG
GANNACANNGANGGANNNNCGANANNAAACCANCCCCGCANNCCGGGAAC
AAAACCCACNGGGNCAGGACGGACGAAAGCCCAATTTGCACAAGGACCCG
GNCAGCGAGANACCAACCGAGGACCNNCGCAACGACANNCANAAGAGATT
TTTTTCTTTATGAACACCANCCACGACGGANCCCCCAGAGGATTAGGCCC
CCCCCCCACAGCGGCNGCANAAAAGGAGGCGGGAAGAGCACNCCCCACCC
CCAGCNAGCGAAAAAGANCGCGCAGAACCGGAACCAGACCCCCACCGAAG
GCCCGAAAGAACCCAGCACAAAACCCGCCAGCGCCAGGGCCAAAANAGGC
CGAGAGACCACCCACAAACGCCACAACACCCACAGGCGACAAGGGACCGG
CCAGAAGGCCACCCCGACCCCAGAAGCCCCCCAGCAACCGGGCAACAGCC
CCAGAAAACAGACCCACACCCCCAGCACACGCGCCGCAGCCATTTTTTTT
CCCCGGCAACAATACCTAAGGCTCCTTATTTTTCG
CGATGCAGTGGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCATTCTCTGAGGCCAATTCCACCACTCTGC
TGATCTTGCAGGTACAACTTAGGCCATTGAAAAGACCGTCATTTTTTTTT
TTCCTGTCTGTACGCAGTAAAAGCTTGGAAATAGAATTTAGTGAAATTCA
TGTTCAGTTTTTGTTACTTTTCTCCAAATTACCTGTTTAAAAACAAACCC
AGAAACTTCTGCTTCAGCCACATAGGTACAGCCACATAGGCACCTTTTTA
GAGAAAGCACCCAGGGGATATGTCCAAGCACAGGCAAAACCAGCATCCCA
CCTCTACTACGCTACCATCTTACCTGGCAAGGTCATCAGTAAGTAACTCA
TTTATTTAACCCCCCACCATGCCCTCCTTATTAGATGTCAATGATTGCCT
CATTTCTGGAGGAAATGTGTTTTACAAGGGAATTTTTATTATGTTGGGCA
GAGACCAAAGCTTCATCTAATTTGCTTTGGCTTGGAGTCCCATCATGTGT
TCTGAATGACTAGTTCAGGATGAATACTTCCCTTTTGGTTTCTAAGAATC
TCTCTTCCAGCTATATAGGGGGAAAGCGTCCCTTACATCATAAATCCTCT
AGTGTGAACCACCAGTTTCTCATACTGAGGTCACACCAGGAAGTTGGATA
AA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no145_j12.g1 MSMg01no145_j12.g1 CHROMAT_FILE:
MSMg01no145_j12.g1 PHD_FILE: MSMg01no145_j12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:43 2005
         (466 letters)



>mm_chr14_23610729_23611592
          Length = 864

 Score =  835 bits (432), Expect = 0.0
 Identities = 457/466 (98%), Gaps = 2/466 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcattctctgaggccaattccaccactctgctgatcttgcaggtacaacttaggccattg 60
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 664 tcattctctgaggccaattccgccactctgctgatcttgcaggtacaacttaggccattg 605

                                                                       
Query: 61  aaaagaccgtcatttttttttttcctgtctgtacgcagtaaaagcttggaaatagaattt 120
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 aaaagaccgtca--tttttttttcctgtctgtacgcagtaaaagcttggaaatagaattt 547

                                                                       
Query: 121 agtgaaattcatgttcagtttttgttacttttctccaaattacctgtttaaaaacaaacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 agtgaaattcatgttcagtttttgttacttttctccaaattacctgtttaaaaacaaacc 487

                                                                       
Query: 181 cagaaacttctgcttcagccacataggtacagccacataggcacctttttagagaaagca 240
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 486 cagaaacttctgcttcagccacataggcacagccacataggcacctttttagagaaagca 427

                                                                       
Query: 241 cccaggggatatgtccaagcacaggcaaaaccagcatcccacctctactacgctaccatc 300
           ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 426 cccagggaatatgtccaagcacaggcaaaaccagcatcccacctctactatgctaccatc 367

                                                                       
Query: 301 ttacctggcaaggtcatcagtaagtaactcatttatttaaccccccaccatgccctcctt 360
           |||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||
Sbjct: 366 ttacctggcaaggtcatcagtaagtaactcatttatttaatccctcagcatgccctcctt 307

                                                                       
Query: 361 attagatgtcaatgattgcctcatttctggaggaaatgtgttttacaagggaatttttat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 attagatgtcaatgattgcctcatttctggaggaaatgtgttttacaagggaatttttat 247

                                                         
Query: 421 tatgttgggcagagaccaaagcttcatctaatttgctttggcttgg 466
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tatgttgggcagagaccaaagcttcatctaatttgctttggcttgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 864
Length adjustment: 10
Effective length of query: 456
Effective length of database: 854
Effective search space:   389424
Effective search space used:   389424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)