Query= MSMg01no146_j10.b1 MSMg01no146_j10.b1 CHROMAT_FILE:
MSMg01no146_j10.b1 PHD_FILE: MSMg01no146_j10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:08:32 2005
(678 letters)
>mm_chr14_114293177_114294254
Length = 1078
Score = 891 bits (461), Expect = 0.0
Identities = 512/539 (94%), Gaps = 19/539 (3%)
Strand = Plus / Minus
Query: 9 tctatggactttaaccacccatactaaagtctaaa----cccccatttctgtatcattgt 64
||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct: 535 tctatggactttaaccacccaaactaaagtctaaataat----catttctgtatcattgt 480
Query: 65 ttatatcacgatccatgttatatatctataaatgagaaaagtaactaaggtagattctat 124
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 ttatatcaagatccatgttatatatctataaatgagaaaagtaactaaggtagattctat 420
Query: 125 atgtttttatgttaatgtacttctaatcagctatatcagaattaaaaacaagaataataa 184
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 419 atgtttttatgttaatgtacttctaatcagctttatcagaattaaaaacaagaataataa 360
Query: 185 atattagctacaggtaagcagagtgtcataggaaacaaaagaaagggacagaggagtcat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 atattagctacaggtaagcagagtgtcataggaaacaaaagaaagggacagaggagtcat 300
Query: 245 tattataaggtaactatccaacagtaagtgtaaaactacacataatgacttgacttatac 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 tattataaggtaactatccaacagtaagtgtaaaactacacataatgacttgacttatac 240
Query: 305 tgggttaacatattaactgaatacaaaggtcttacaggagggaaattgac--aaaaaata 362
|||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 239 tgggttaacacaggaactgaatacaaaggtcttacaggagggaaattgacaaaaaaaata 180
Query: 363 cctcagcttgatgatggacatagagaagagtgataattagatgaa---------tgttag 413
||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 179 cctcagcttgatgatggacatagagaagagtgataattagatgaatggtatctttgttag 120
Query: 414 acataatattaagaaacataatatgaagatgaatattaatattcatctcctaaacctata 473
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119 acatagtattaagaaacataatatgaagatgaatattaatattcatctcctaaacctata 60
Query: 474 cccacactttagtcaatggaaaaacattaagcaattgttagttgagaaacatgagataa 532
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 59 cccacactttagtcaatggaaaaacattaagcaattgttagttgagaaacataagataa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 678
Length of database: 1078
Length adjustment: 10
Effective length of query: 668
Effective length of database: 1068
Effective search space: 713424
Effective search space used: 713424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no146_j10.g1 MSMg01no146_j10.g1 CHROMAT_FILE:
MSMg01no146_j10.g1 PHD_FILE: MSMg01no146_j10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:08:32 2005
(640 letters)
>mm_chr14_114203995_114205033
Length = 1039
Score = 1098 bits (568), Expect = 0.0
Identities = 623/642 (97%), Gaps = 3/642 (0%)
Strand = Plus / Plus
Query: 1 aggacttcatatttttcttttcagtctcataattgggcagccagcccccataagcatgaa 60
||||||||||||||||||||||||||| |||| ||||||||||| | |||||||||||||
Sbjct: 201 aggacttcatatttttcttttcagtcttataa-tgggcagccagtctccataagcatgaa 259
Query: 61 tatacttgcatagcagaacaggatgtgataggaactctagtgatcaaagcaaaagttagt 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 260 tatacttgcatagcagaacaggatgtgataggaactctagtgatcaaagcaaaagttaat 319
Query: 121 aagaaaagagccaggttgatgatgtcaaagaacattaagcttcttaatgagaagacaggc 180
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct: 320 aagaaaagagccaggttgatgatgtcaaagaacattatgcttcttaatgagaagacagac 379
Query: 181 acagggttgttattttaaggaattaaatatgagtaaggattttccaaagctggtacaagc 240
|| |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 380 acggggttgttgttttaaggaattaaatgcgagtaaggattttccaaagctggtacaagc 439
Query: 241 tgaagaatacttgtggatatttttcactcattttcagaatcattcctgagttgtagtgtg 300
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 440 tgaagaatacttgtggatatttttcactcattttcagaatcattcctaagttgtagcgtg 499
Query: 301 tgattccagatcaaaattaaagagatgacaggcagtattaatatggggactaggacatat 360
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tgattccagatcaaaaggaaagagatgacaggcagtattaatatggggactaggacatat 559
Query: 361 gaacatatgtttgtacacatgaaaattacaaataagcgtgtagagtccttgaagtgatga 420
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 560 gaacatatgtttgtacacatgaaaattacaaataagcgtgtagagtcctagaagtgatga 619
Query: 421 ctgagaggacaaaggccataatggctggcaaagagatactggacaacaaacatatggcat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ctgagaggacaaaggccataatggctggcaaagagatactggacaacaaacatatggcat 679
Query: 481 gatgttttatagcacttcttacagtggtggcatgggtcattaatactattttaaactgtt 540
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gatgttttatagcagttcttacagtggtggcatgggtcattaatactattttaaactgtt 739
Query: 541 ctccaatgctttcacatattagcataaaatgtcacacataaatcttgattagagtagttg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 ctccaatgctttcacatattagcataaaatgtcacacataaatcttgattagagtagttg 799
Query: 601 tacagtgaaatatttcttttttcttt--ttcttttttttttt 640
|||||||||||||||||||||||||| ||||||||||||||
Sbjct: 800 tacagtgaaatatttcttttttctttctttcttttttttttt 841
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1039
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1029
Effective search space: 648270
Effective search space used: 648270
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
