BAC Information

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BAC

Clone NameMSMg01-147A19
Chromosome14 (Build37)
Map Location 36,695,989 - 36,696,477
singlet/doubletsinglet
Overlap genenone
Upstream geneGrid1, 4930596D02Rik, LOC100040277
Downstream geneLOC665933, 4930474N05Rik, Gcap14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-147A19.T7 (MSMg01no147_a19.b1)MSMg01-147A19.TJ (MSMg01no147_a19.g1)
ACCAG350425AG350426
length717700
length of high quality
(start - end)
659 (56 - 714)621 (71 - 691)
definitionCHROMAT_FILE: MSMg01no147_a19.b1 PHD_FILE: MSMg01no147_a19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:09:32 2005CHROMAT_FILE: MSMg01no147_a19.g1 PHD_FILE: MSMg01no147_a19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:09:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNNAAAACGTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTAC
AGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAAT
CCCACTAAAAAAAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTT
TCATCATAGTACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAG
ATCAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGC
AGATGATATGATAGTATATATAAGTGACCCTAAAAATTCTACCAGAGAAC
TCCTAAACCTGATAAACAGCTTCGGTGAAGTAGCTGGATATAAAATAAAC
TCAAACAAGTCAATGGTCTTTCTCTATACAAAGAATAAACAGGCTGAGAA
AGAAATTAGGGAAACAACACCCTTCTCAATAGTCACAAATAATATAAAAT
ATCTTGGCGTGACTCTAACTAAGGAAGTGAAAGATCTGTATGATAAAAAC
TTCAAATCTCTGAAGAAAGAAATTAAGGAAGATCTCAGAAGATGGAAAGA
TCTCTCATGTTCATGGATTGGCAGGATCAACATTGTAAAAATGGCTATCT
TGCCAAAAGCAATCTACAGATTCAATGCAATCCCCATCAAAATTCCAACT
CAATTTTTCAACGAATT
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCACCCGAGGAATACTGAATGGCTGAGAAG
CACCTGAAAAAATGTTCAACATCCTTAATCATCAGAGAAATGCAAATCAA
AACAACCCTGAGATTCCATCTCACACCAGTCAGAATGGCTAAGATCAAAA
ATTCAGGTGACAGCAGATGCTGGCAAGGATGTGGAGAAAGAGGAACACTC
CTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGT
CTGGCCGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAA
TACCTCTCCTGGGCATATATCTAGAAGATGTCCCAACCGGTAAGAAGAAA
ACTTTAAATCCATAATATTGGAACCTTGTGGTCCCAGCCACTGCAATACA
GGCTTTCTTAGACAAATGCAGTTTTTGGAAGTGAGATTCCTAGCAAATTG
TTAGTGCATCAAACAACATTGCTCCAATCATAAATTTTATAAAATGTTTT
CCAAGAGACTGTATTTTCATTAATTCCCATTAGTTGCCATATTTCTCAGA
AAGAGTCCCTCCTTAGATAAGGCAAGTAGAAGGCACTGTGTGAATCATCT
CATCTATTTACCTTTTTGCTTTTGCTAAGGAAACTCATGGTGCAATCAAT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no147_a19.g1 MSMg01no147_a19.g1 CHROMAT_FILE:
MSMg01no147_a19.g1 PHD_FILE: MSMg01no147_a19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:09:32 2005
         (621 letters)



>mm_chr14_36695457_36696477
          Length = 1021

 Score =  930 bits (481), Expect = 0.0
 Identities = 487/489 (99%)
 Strand = Plus / Minus

                                                                        
Query: 133  tcaggtgacagcagatgctggcaaggatgtggagaaagaggaacactcctccattgttgg 192
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 tcaggtgacagcagatgctggcaaggatgtggagaaagaggaacactcctccattgttgg 962

                                                                        
Query: 193  tgggattgcaagcttgtacaaccactctggaaatcagtctggccgttcctcagaaaattg 252
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 961  tgggattgcaagcttgtacaaccactctggaaatcagtctggccgttcctcaggaaattg 902

                                                                        
Query: 253  gacatagtactaccggaggatccagcaatacctctcctgggcatatatctagaagatgtc 312
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901  gacatagtactaccggaggatccagcaatacctctcctgggcatatatctagaagatgtc 842

                                                                        
Query: 313  ccaaccggtaagaagaaaactttaaatccataatattggaaccttgtggtcccagccact 372
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841  ccaaccggtaagaagaaaactttaaatccataatattggaaccttgtggtcccagccact 782

                                                                        
Query: 373  gcaatacaggctttcttagacaaatgcagtttttggaagtgagattcctagcaaattgtt 432
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781  gcaatacaggctttcttagacaaatgcagtttttggaagtgagattcctagcaaattgtt 722

                                                                        
Query: 433  agtgcatcaaacaacattgctccaatcataaattttataaaatgttttccaagagactgt 492
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721  agtgcatcaaacaacattgctccaatcataaattttataaaatgttttccaagagactgt 662

                                                                        
Query: 493  attttcattaattcccattagttgccatatttctcagaaagagtccctccttagataagg 552
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 661  attttcattaattcccattagttgccatatttctccgaaagagtccctccttagataagg 602

                                                                        
Query: 553  caagtagaaggcactgtgtgaatcatctcatctatttacctttttgcttttgctaaggaa 612
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601  caagtagaaggcactgtgtgaatcatctcatctatttacctttttgcttttgctaaggaa 542

                     
Query: 613  actcatggt 621
            |||||||||
Sbjct: 541  actcatggt 533


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1021
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1011
Effective search space:   617721
Effective search space used:   617721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)