BAC Information

Click to search

BAC

Clone NameMSMg01-147I15
Chromosome14 (Build37)
Map Location 109,478,945 - 109,479,283
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668757, EG668761, Slitrk1
Downstream geneLOC640892
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-147I15.T7 (MSMg01no147_i15.b1)MSMg01-147I15.TJ (MSMg01no147_i15.g1)
ACCAG350786AG350787
length699687
length of high quality
(start - end)
339 (83 - 421)426 (71 - 496)
definitionCHROMAT_FILE: MSMg01no147_i15.b1 PHD_FILE: MSMg01no147_i15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:10:09 2005CHROMAT_FILE: MSMg01no147_i15.g1 PHD_FILE: MSMg01no147_i15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:10:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCCCCTTATCTATAATTGCGGCGCTAATACGACTCCTATTCCAAGAGAT
CCGCGGAATTCACACACTCTTCTTTTCATGCTAGTGAAGAAAAATCTACT
TGTGCTTGCTCTGTGTGCTCATATGGAGCACAAGTTAAAAATATGTAAAA
ATGTTTAAGTACAGGAGTAATACTTATCTCACAATGGAGAAAAATTAATT
TATAATTCTATGCAAATGACACACTAGCCATTCTACAAAGAAGTATTTTA
GATTTGATTATTTATGCTTTCTTGTTAAAAATTGAGTGAAGTCTTTATAG
GTGCAGTTCCTTGTCATATATAAAAATGGTGTATGGCAGAATTGCCCTGG
TGCTATGCCTCTTACTGTATTGTCATCTTCTTTGAAATTTCTTAAATCTT
ATATGTAGAAGTTGCTTTTGTAGATATGTCAGTTTAAGGTTGGGAATCCC
TCAGATATTTATTCTATGTTTTTACCAGCAGTCAATTTCTGCAACGTTTT
TCATCTGATGCAAAAATAATCTTCATAATCTGCATAATCATGATAATAAT
TGATATTCCAACACTGATAGAATTCTCACAAGGCCCCCTCCCAAGATGAA
ACACTCCTTCCATTTAAGGGTTAAACCCTTTTTATCCACGATGAGACCAC
TGATAATTTGTCCACTCCCCAACATAAACCCTGACCAACAAATGGAGTC
ACTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCACCTGAGGAAACCAAATGGCAGAGAAGC
ACCTGAAAAAATGTTCAACATCCTTAATCATCTGGGAAATGCAAATCAAA
ACAACCCTGAGATTCCACCTCACACCAGTCAGAACGGCTAAGATCAAAAA
TTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCC
TCCATTGCTGGTGGGATTGCAAGCTGGTACAACCACTCTGGAAATCAGTC
TGGCGGTTCCTCAGAAAATTGGACATAGTACTACCAGAGGATCCAGCAAT
ACCTCTCCTGGGCATATATCCAGAAGATGCCCAAACTGGTAAGAAGGACA
CATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGG
AAAGAACCCAGATGCCCCTCAACAGAGGAATGGATAAAGAAAATGTGGTA
CATCTACCCAATGCAGTACTACTCAGCTATTAAAAAGAATGAATTTATGA
AATTCCTAGGCAAATGCATGTACCTGGAGGGCATCCTGCTGAGTGAGGTA
ACACATTCCCCAAGGAACTCCCCCCATATGTACCTCCTGATAAGTGGACA
TTAGCCCCCACCCCAGGATACCCCAGATATAAGACAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no147_i15.b1 MSMg01no147_i15.b1 CHROMAT_FILE:
MSMg01no147_i15.b1 PHD_FILE: MSMg01no147_i15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:09 2005
         (339 letters)



>mm_chr14_109478745_109479483
          Length = 739

 Score =  656 bits (339), Expect = 0.0
 Identities = 339/339 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtgaagaaaaatctacttgtgcttgctctgtgtgctcatatggagcacaagttaaaaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 agtgaagaaaaatctacttgtgcttgctctgtgtgctcatatggagcacaagttaaaaat 480

                                                                       
Query: 61  atgtaaaaatgtttaagtacaggagtaatacttatctcacaatggagaaaaattaattta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 atgtaaaaatgtttaagtacaggagtaatacttatctcacaatggagaaaaattaattta 420

                                                                       
Query: 121 taattctatgcaaatgacacactagccattctacaaagaagtattttagatttgattatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 taattctatgcaaatgacacactagccattctacaaagaagtattttagatttgattatt 360

                                                                       
Query: 181 tatgctttcttgttaaaaattgagtgaagtctttataggtgcagttccttgtcatatata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 tatgctttcttgttaaaaattgagtgaagtctttataggtgcagttccttgtcatatata 300

                                                                       
Query: 241 aaaatggtgtatggcagaattgccctggtgctatgcctcttactgtattgtcatcttctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 aaaatggtgtatggcagaattgccctggtgctatgcctcttactgtattgtcatcttctt 240

                                                  
Query: 301 tgaaatttcttaaatcttatatgtagaagttgcttttgt 339
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 239 tgaaatttcttaaatcttatatgtagaagttgcttttgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 739
Length adjustment: 9
Effective length of query: 330
Effective length of database: 730
Effective search space:   240900
Effective search space used:   240900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)