Query= MSMg01no148_a11.b1 MSMg01no148_a11.b1 CHROMAT_FILE:
MSMg01no148_a11.b1 PHD_FILE: MSMg01no148_a11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:48 2005
(537 letters)
>mm_chr14_59443369_59444305
Length = 937
Score = 965 bits (499), Expect = 0.0
Identities = 525/539 (97%), Gaps = 12/539 (2%)
Strand = Plus / Plus
Query: 5 gaattcagcagcattccc--cagttataaaagtacccaaatcagttggcctgctacacag 62
||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagcagcag--ccaacagttataaaagtacccaaatcagttggcctgctacacag 262
Query: 63 tcaacagtccaaacacatgcttcaaaaggattcaggctccagactgacgaaagctaagat 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tcaacagtccaaacacatgcttcaaaaggattcaggctccagactgacgaaagctaagat 322
Query: 123 cttcaggtataaacataaagaaaaattgtacagtcgttgtgggaaaaagtcataatcagg 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 cttcaggtataaacataaagaaaaattgtacagtcgttgtgggaaaaagtcataatcagg 382
Query: 183 ccaaagcaaaaataaatcatcattggaaaaaaccaccacatactggatagaaaacttaat 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ccaaagcaaaaataaatcatcattggaaaaaaccaccacatactggatagaaaacttaat 442
Query: 243 atttttagcatgccaactctctatacggcagcactcattttatctatgtccaaatatatt 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 atttttagcatgccaactctctatacggcagcactcattttatctatgtccaaatatatt 502
Query: 303 ctccagaagacaattctaagcaatgacaagacataaaaatgtatatataaagtagacatc 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ctccagaagacaattctaagcaatgacaagacataaaaatgtatatataaagtagacatc 562
Query: 363 ttttgaataaa----ccccccggaaaaggatactcagtggggaaggagtctaactgtata 418
||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ttttgaataaaaattct----ggaaaaggatactcagtggggaaggagtctaactgtata 618
Query: 419 ttagaatggactgtttaatttgtattatgtggaattggtcaggttagtggttctgtatca 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ttagaatggactgtttaatttgtattatgtggaattggtcaggttagtggttctgtatca 678
Query: 479 atatactgagaaacctacgtcataataaaaatggttgattttggatgattgcttcagtg 537
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 atatactgagaaacctacgtcataataaaaatggttgattttggatgattgcttcagtg 737
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 937
Length adjustment: 10
Effective length of query: 527
Effective length of database: 927
Effective search space: 488529
Effective search space used: 488529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no148_a11.g1 MSMg01no148_a11.g1 CHROMAT_FILE:
MSMg01no148_a11.g1 PHD_FILE: MSMg01no148_a11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:48 2005
(408 letters)
>mm_chr14_59559176_59559982
Length = 807
Score = 750 bits (388), Expect = 0.0
Identities = 403/408 (98%), Gaps = 1/408 (0%)
Strand = Plus / Minus
Query: 1 cataattttgattatattttttttctgatggctgagggtgccagttctcaaatgtataag 60
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 cataattttgattata-tttttttctgatggctgagggtgccagttctcaaatgtataag 549
Query: 61 tatgctcattgttattatggggcatattggtatagtcagatttaaaaatgctgagttgtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 tatgctcattgttattatggggcatattggtatagtcagatttaaaaatgctgagttgtc 489
Query: 121 tgtcccttagttttctattgggcataaggcaggtaaagtttgaatgtcataactggacta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 tgtcccttagttttctattgggcataaggcaggtaaagtttgaatgtcataactggacta 429
Query: 181 gtctttgtctctttgccttttatctttcaactgcctttaccattgtgaataaaagcacaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 gtctttgtctctttgccttttatctttcaactgcctttaccattgtgaataaaagcacaa 369
Query: 241 gaaagtttggtgtttgttgcagacttaccactgggtgtctgtgctctgtgctaagagcta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 gaaagtttggtgtttgttgcagacttaccactgggtgtctgtgctctgtgctaagagcta 309
Query: 301 tgtgaagacaatatgtctttagagaccagcagtttataccccccattgagtatcatgtca 360
|||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||
Sbjct: 308 tgtgaagacaatatgtctttagagaccagcagtttacacctcagattgagtatcatgtca 249
Query: 361 ggaagtgttcaaaatcatcacttgagggttctgcattgccttgtcatc 408
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggaagtgttcaaaatcatcacttgagggttctgcattgccttgtcatc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 807
Length adjustment: 9
Effective length of query: 399
Effective length of database: 798
Effective search space: 318402
Effective search space used: 318402
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
