BAC Information

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BAC

Clone NameMSMg01-148E01
Chromosome14 (Build37)
Map Location 75,480,858 - 75,481,193
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC629583, Htr2a, LOC668508, Esd, Lrch1, ENSMUSG00000075519, LOC100043169, 5031414D18Rik
Downstream gene4921509B22Rik, LOC100043176, Lcp1, Cpb2, Zc3h13, Gm912, Spert, 4930564B18Rik, Cog3, Slc25a30, LOC100043189, Tpt1, LOC100038852, Gtf2f2, LOC668504, Kctd4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-148E01.T7 (MSMg01no148_e01.b1)MSMg01-148E01.TJ (MSMg01no148_e01.g1)
ACCAG351306AG351307
length755711
length of high quality
(start - end)
371 (46 - 416)341 (77 - 417)
definitionCHROMAT_FILE: MSMg01no148_e01.b1 PHD_FILE: MSMg01no148_e01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:11:05 2005CHROMAT_FILE: MSMg01no148_e01.g1 PHD_FILE: MSMg01no148_e01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:11:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATCCGC
GGAATTCTTAACTTACACTCGCAAGTGGCTGAGAAGCACTTAAAGAAATG
TTCCACATCCTTAGTCATCAGGGAAATGCAAGTCAAAATGACTCTGCGAT
TCCACCTTACCCCCATTAGAATGACTAAGGTAAAAAAAAAAACTCGGTAG
AACACATGCTAGTGAGTATGTGGAGCAAGGGGAACACCCCCCCACCCCGC
CCCACTGCTGCTGGGAGTGCAAACTTGTACAACCTCTCTGGAAATCAATT
TGGCAGTTTTTCAGAAAATTGCAAGAGCCAGCTATACCACCACTGGGCTT
ATACCCAAAAGACGCTCCACCATACCACAAGGACACTTGCTCTACTATGC
TCATAGAAGTTTTATTCGCCACACCCAGAAACCAGAAACAACCTAGATGT
CCCTCAGCCAAGGAATAGATAAGCAAAATGTGGTTCTTTTACAGATCCCC
TTTCTCAGAGGAGAAAGGGACACGTTATGGGGGAGGCGCAGGACATGNGC
GTTTTTTACCCACATTTCTCTCCCCCCTTTTTCCTTCTTCTCCCCTTCTT
TCCTCCCCCCTCTCACTTTATTCTTTCTATCCTCCTCAATCCTCCCATCT
CTCTTTCCTTTTTCACTTTTTTGCCGCCCTATTTTACCTTACCCCCTCCC
CACTACCCTCCTTATCAATCACACTTGTTTTTATTCCCTCCATTTCATTC
TCCCA
NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCATGAGTCCACCTGTCAGTGATA
ACCACTGGCAAACGCGCTCAAGGACCTCCACCAGAGCCATCCTCCTGGCA
TGGGTGGAGCCTACAAAGCTCTTGAGTGTTCTAAACAGAGAAGATTTCCT
GGTGGAACCATGCATCATCCGACTGTTCCCCCACTTGGTGAGATGTCTAT
TTAGCCTTTATGGTAGAGTAAGGAGTGTTTGTGGGAATAAAGCAAACATA
TTTGAAAGACAAATCTGGTGGATATCCTAATTGCTGAGAGAGCATCACAA
CCCACAGGAGTCTGCTTGTTTTTGTTTTTGTTTTTGTTTTTCACAGAAAC
AAGAAGAGAACTAGAACACCCGGATAGAAGACAAATTTAACGGTGCTGTT
AAGAGACAGATGACAGGCATACAGGAAAAGAGACTGTACCTTAATGACAC
AGCTTGAGGTACTGAATTATCTTGCCTATGGACAATTGCACAAAGCAATT
TATTTTCCTTTTTTGGGCCATATGTGGTTTTGCCCGTTTCTATCAGGATT
CCCGTCTAGAACGCCCATATCCCTGGTGCGCTGCTCGCCCTATAATTTAT
ATGTAGGATGGTTAGTTTTATCTGTACAGCTTTTTTTTTCTTGGTGTACT
GCTGATTGAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no148_e01.g1 MSMg01no148_e01.g1 CHROMAT_FILE:
MSMg01no148_e01.g1 PHD_FILE: MSMg01no148_e01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:05 2005
         (341 letters)



>mm_chr14_75480658_75481399
          Length = 742

 Score =  559 bits (289), Expect = e-163
 Identities = 327/343 (95%), Gaps = 9/343 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccatgagtccacctgtcagtgataaccactggcaaacgcgctcaaggacctccaccagag 60
           |||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct: 201 ccatgagtacacctgtcagtgataaccactggcaaacgtgctcaaagacctccaccagag 260

                                                                       
Query: 61  ccatcctcctggcatgggtggagcctacaaagctcttgagtgttctaaacagagaagatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccatcctcctggcatgggtggagcctacaaagctcttgagtgttctaaacagagaagatt 320

                                                                       
Query: 121 tcctggtggaaccatgcatcatccgactgttcccccacttggtgagatgtctatttagcc 180
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 321 tcctggtggaaccatgcatcatccgactgttcccc-acttggtgagatgtctatttagcc 379

                                                                       
Query: 181 tttatggtagagtaaggagtgtttgtgggaataaagcaaa--catatttgaaagacaaat 238
           ||||||| |||||||||||||||||||  |||||||||||  ||||||||||||||||||
Sbjct: 380 tttatggcagagtaaggagtgtttgtgtaaataaagcaaaaacatatttgaaagacaaat 439

                                                                       
Query: 239 ctggtggatatcctaattgctgagagagcatcacaacccacaggagtctgcttgtttttg 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||     |
Sbjct: 440 ctggtggatatcctaattgctgagagagcatcacaacccacaggagtctgcttg-----g 494

                                                      
Query: 299 tttttgtttttgtttttcacagaaacaagaagagaactagaac 341
           |||| ||||||||||||||||||| ||||||||||||||||||
Sbjct: 495 tttt-gtttttgtttttcacagaatcaagaagagaactagaac 536


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 742
Length adjustment: 9
Effective length of query: 332
Effective length of database: 733
Effective search space:   243356
Effective search space used:   243356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)