BAC Information

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BAC

Clone NameMSMg01-148F19
Chromosome14 (Build37)
Map Location 50,475,583 - 50,476,107
singlet/doubletsinglet
Overlap genenone
Upstream geneExoc5, 4932432K03Rik, LOC218997, Nat12, 1700011H14Rik, Slc35f4, 3632451O06Rik, LOC667006
Downstream geneOlfr722, Olfr723, Olfr724, LOC100041975, Olfr725, LOC100042882, Olfr726, Olfr727, Olfr728, Olfr729, Olfr730, Olfr731, Olfr732, Olfr733, Olfr734, Olfr735, Tlr11, Olfr736, Olfr737-ps1, Olfr738, Olfr739, Olfr740, Olfr741, GA_x5J8B7U07Q4-325-757, GA_x5J8B7TYL6J-3-280, Olfr742, Olfr743-ps1, Olfr744, Olfr745, Olfr746, Olfr747, Olfr748, Olfr749, Ttc5, Gm288, Rpph1, Parp2, Tep1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-148F19.T7 (MSMg01no148_f19.b1)MSMg01-148F19.TJ (MSMg01no148_f19.g1)
ACCAG351376AG351377
length741736
length of high quality
(start - end)
595 (73 - 667)625 (67 - 691)
definitionCHROMAT_FILE: MSMg01no148_f19.b1 PHD_FILE: MSMg01no148_f19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:11:14 2005CHROMAT_FILE: MSMg01no148_f19.g1 PHD_FILE: MSMg01no148_f19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:11:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAAATACGCGGAAT
TCACAAAACCCATTCCCTTATAAATAGCTGCTACCTTCACTCAAGGAAAA
CTTGAAAATTCAAGTATTACTAATTCAAAGTGATTTTCATCCCTACAGAG
AAACTCAAATGTTAAGTATTAAGTCAAAATCTCCACAGTGGTGAGTATGC
CTTCATTTTCAGTTCCTTCCCAGGGTCTTAATAATTGATATTATCATAAG
TGGCTGTAGAGAATCTTTATGTGAATTGAATTGGAAGGCCAATTACTTGG
TTGCTCTGACTGTTAGTACAAGAGTGAAGTGCAGGCCTGGGGAATAGGCT
CAGTGGATGAGGAGCATGCTGAGCAAGCTTAAAGAATTGTGTCAGGAGGG
CTTCCTGGCCAGCGGAGCCCCCTGACACCCGCAAGGGCCCACACAGGATT
CCCCACGGGATCCTAAGACCTCTGGTGAGTGGAACACAGCGCCGGCCCCA
ATCCAATCGCGCGGAACCTGAGACTGCAGTACATAGGGAAGCAGACTGCC
CGGGCCTGACCCGGGGCAAAAGCCCCTTCCGCTCCACTCCAGCCCAGGGC
TTCCTGGCCAGCGGAGTTGCCTGACACCCGCAAGGGCCCACACAGGATTC
CCCACGGGATCCTAAGACCTCTGGTGAGTGGAGCACAGCGCCGGTCCCAA
TCCAATCGCGCGGAACCTGAGACTGCAGTACATAGGGAAGC
ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTTCCCAATTCTCATTTGAGGAATACTGAATGGCTGAGAAGCACC
TAAAGAAATGTTCAACATCCTTAGTCATTAGGGAAATGTAAATCAAAACA
ACCCTGAGGTTCCACCTTACACCAGTCAGAATGGCTAAAATCAAAACTCA
GGGGACAGCAGATGCTGTCAAGGATGTGTAGAAAGAGGAACACTCTTCTA
TTTCTGGTGACAGTACAACCATTCTGGAAATCATTCTGGTGGTTCCTCAG
AAAATCAGTCATAGTACTACCATAGGAGCCAGCTATAGCACTCCTGAGCA
TATACCCAGAAGATGCTCCAACATGTAATAAGGACACATGCTCCACTATG
TTCATAGCAGCCTCACTTACAATAGCCAAAAGCTGGAAAGAACCCAGATG
TCCTTCAACAGAAGAATGGTTACAGAAAACATGGTACATTTACAAAATGG
AGTACTATACAGCTATGAAAAACAATGAATTCATGAAGTTCTTTGGCAAA
TGGATGGATCTGGAGGATATCATCCTGAGTGAGGTAACCCAATCACAAAA
GAATACACATGGTATGCACTCTCTGGTAAATGAATATTAGCCCAAAAGTT
CAGAATACCCAAGATACAATTCACATACCACATGAAGCTCAAGAAGAANA
AAGACCACAGAGTTGATACTTCGGTCTTTCATAGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no148_f19.b1 MSMg01no148_f19.b1 CHROMAT_FILE:
MSMg01no148_f19.b1 PHD_FILE: MSMg01no148_f19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:14 2005
         (595 letters)



>mm_chr14_50475583_50476577
          Length = 995

 Score =  992 bits (513), Expect = 0.0
 Identities = 522/525 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatagctgctaccttcactcaaggaaaacttgaaaattcaagtattactaattcaaagtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 aatagctgctaccttcactcaaggaaaacttgaaaattcaagtattactaattcaaagtg 466

                                                                       
Query: 61  attttcatccctacagagaaactcaaatgttaagtattaagtcaaaatctccacagtggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 attttcatccctacagagaaactcaaatgttaagtattaagtcaaaatctccacagtggt 406

                                                                       
Query: 121 gagtatgccttcattttcagttccttcccagggtcttaataattgatattatcataagtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 gagtatgccttcattttcagttccttcccagggtcttaataattgatattatcataagtg 346

                                                                       
Query: 181 gctgtagagaatctttatgtgaattgaattggaaggccaattacttggttgctctgactg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 gctgtagagaatctttatgtgaattgaattggaaggccaattacttggttgctctgactg 286

                                                                       
Query: 241 ttagtacaagagtgaagtgcaggcctggggaataggctcagtggatgaggagcatgctga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 ttagtacaagagtgaagtgcaggcctggggaataggctcagtggatgaggagcatgctga 226

                                                                       
Query: 301 gcaagcttaaagaattgtgtcaggagggcttcctggccagcggagccccctgacacccgc 360
           |||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||
Sbjct: 225 gcaagcttaaagaattgtgtcaggagggcttcctggccagcggagttgcctgacacccgc 166

                                                                       
Query: 361 aagggcccacacaggattccccacgggatcctaagacctctggtgagtggaacacagcgc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 aagggcccacacaggattccccacgggatcctaagacctctggtgagtggaacacagcgc 106

                                                                       
Query: 421 cggccccaatccaatcgcgcggaacctgagactgcagtacatagggaagcagactgcccg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105 cggccccaatccaatcgcgcggaacctgagactgcagtacatagggaagcagactgcccg 46

                                                        
Query: 481 ggcctgacccggggcaaaagccccttccgctccactccagcccag 525
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45  ggcctgacccggggcaaaagccccttccgctccactccagcccag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 995
Length adjustment: 10
Effective length of query: 585
Effective length of database: 985
Effective search space:   576225
Effective search space used:   576225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)