BAC Information

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BAC

Clone NameMSMg01-149J20
Chromosome14 (Build37)
Map Location 8,586,467 - 8,586,840
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042043, EG666918, LOC100041700, LOC100042054, LOC100042100, EG622781, LOC100041740, LOC100038847, LOC100042129, LOC100041770, LOC100042149, LOC544988, EG626456, LOC100041791, LOC100042164, LOC100042182, LOC100041808, LOC100042192, LOC100042207, EG432817, LOC100042217, LOC100041830, LOC100042235, EG545013, EG666947, LOC623215, LOC100042286, LOC666957, LOC100042263, LOC100042258, LOC100042272, LOC100041874, LOC100042304, LOC100041881, LOC100042312, LOC100041893
Downstream geneENSMUSG00000058570, EG666976, Flnb, Dnase1l3, Abhd6, Rpp14, Pxk, Pdhb, Kctd6, Acox2, BC055107, Oit1, LOC667005, 4930452B06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-149J20.T7 (MSMg01no149_j20.b1)MSMg01-149J20.TJ (MSMg01no149_j20.g1)
ACCAG352282AG352283
length727723
length of high quality
(start - end)
423 (66 - 488)374 (71 - 444)
definitionCHROMAT_FILE: MSMg01no149_j20.b1 PHD_FILE: MSMg01no149_j20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:57 2005CHROMAT_FILE: MSMg01no149_j20.g1 PHD_FILE: MSMg01no149_j20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAAAGAGGATCCGCGGAATTC
TTGTGTCCCCTTATTCTTGGGTGTTAGGTGAGCATGCAGAATAATTGGAC
TGCTGTATTTGATATTTCATAGGTGCAAACTAAAACCTCAGAGTGTATTT
CTCATTAAATTTGACCTCTAGAGACACACACAGCTGCATTTATGCACAAT
CACACACACACACACACACACACACACACACACACTTGTATATACAAGCA
CCCATATCACAAACACAAAATTACCTAGTATTACACTAATATACAACTTT
AGTATAAACAAGCTCAGCCAAACTTGGTCCAAACACACACAGACAAACAC
ACACACCACACACAAGGAACAAAAACATACACACCACACAATACACACAG
AGACACACAAACACAAATCAATGAAAATATTACTGTCGCCCAGCAAAGCT
CCTGTTGCATGAGCAGCTACTGGGACCTCTGATGTATATGTGCATAAGGT
TCTTAGACTCACGCAGTCTTTGCGGCCCTCATCTGTAATTAACTCCTCTT
CAAAAAAATTTTTATGCAGACGCTTTCTGGTCCTAACAGGAAGCTACAAG
CTCTGCACAGATAACCTAGACCACACAATACCAAATTCCCAAGAATGAGA
TTCCTAATAAAAGCCCCCAGCAAGCCCCATGTTGATTCTCTCGGACCCCT
CACTATAACTAAATTGGTTACTTTGGA
TTGATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTGTAGGTAATTTCTGAAGTGCTGGCTTGG
TCATCATGAACTTCCTTAGCTTGTGCTGTTCTTGAAATGCCCTTATTTTT
CCATTAACTTAAAAAGATAACTTTGGGGATTGAAATACACCATCCCACAC
TTTCCTTGGTTTGATGGTCCCTGGTGCGAGGTGTAGTGTTTTTCTGGTAT
TTCTGCCTTTCTAGGGAAGGTGACATTTCTTTTACCTTTAATAATTATTA
ACTTAATTGATACTATTTAATATTGTTTCTTCACTTCCATTTTTGCATCT
TGACTATAATATATTGTGGGAAGTTTCTTGTGTTATTATATTTACTTGGG
CTTCTACATATTTCTAGAGTTTGAATGTCCATATCCCTACATTTGGGGCA
ATTCTTCCATAATTTCACTGAATAGATTCCTTTTGCCTTCTCTGTGTTTA
TCTTATATTAGCCTTCTATATGTAGATTCATACCTTTGGTCTCCTGATTG
TTTCTTGGAGCTATTGAACATGAAATGCTCATTTTCTCCCTTGCACATAT
ATTTTGCAAACTTTTTCCATGCGCATGTGTGTACTCACCCGCGTGCGCGA
TTATCTATGTATGTACCATATGCGCCGCTATCCCATTCCACGTCTTATTA
TACCACTGATACTGATTCTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no149_j20.g1 MSMg01no149_j20.g1 CHROMAT_FILE:
MSMg01no149_j20.g1 PHD_FILE: MSMg01no149_j20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:12:57 2005
         (374 letters)



>mm_chr14_8586162_8586935
          Length = 774

 Score =  723 bits (374), Expect = 0.0
 Identities = 374/374 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgtaggtaatttctgaagtgctggcttggtcatcatgaacttccttagcttgtgctgtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 ctgtaggtaatttctgaagtgctggcttggtcatcatgaacttccttagcttgtgctgtt 620

                                                                       
Query: 61  cttgaaatgcccttatttttccattaacttaaaaagataactttggggattgaaatacac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 cttgaaatgcccttatttttccattaacttaaaaagataactttggggattgaaatacac 560

                                                                       
Query: 121 catcccacactttccttggtttgatggtccctggtgcgaggtgtagtgtttttctggtat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 catcccacactttccttggtttgatggtccctggtgcgaggtgtagtgtttttctggtat 500

                                                                       
Query: 181 ttctgcctttctagggaaggtgacatttcttttacctttaataattattaacttaattga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ttctgcctttctagggaaggtgacatttcttttacctttaataattattaacttaattga 440

                                                                       
Query: 241 tactatttaatattgtttcttcacttccatttttgcatcttgactataatatattgtggg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tactatttaatattgtttcttcacttccatttttgcatcttgactataatatattgtggg 380

                                                                       
Query: 301 aagtttcttgtgttattatatttacttgggcttctacatatttctagagtttgaatgtcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 aagtttcttgtgttattatatttacttgggcttctacatatttctagagtttgaatgtcc 320

                         
Query: 361 atatccctacattt 374
           ||||||||||||||
Sbjct: 319 atatccctacattt 306


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 774
Length adjustment: 9
Effective length of query: 365
Effective length of database: 765
Effective search space:   279225
Effective search space used:   279225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)