BAC Information

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BAC

Clone NameMSMg01-149N23
Chromosome14 (Build37)
Map Location 22,118,756 - 22,119,325
singlet/doubletsinglet
Overlap geneAdk
Upstream geneNudt13, Ecd, AA536717, Dnajc9, Mrps16, Ttc18, Anxa7, Zmynd17, Ppp3cb, Usp54, Myoz1, Synpo2l, Sec24c, Fut11, Chchd1, 2310021P13Rik, Ndst2, Camk2g, Plau, EG620119, Vcl, Ap3m1
Downstream geneMyst4, EG435391, Dusp13, Samd8, Vdac2, Comtd1, Zfp503, 1700112E06Rik, EG665075
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-149N23.T7 (MSMg01no149_n23.b1)MSMg01-149N23.TJ (MSMg01no149_n23.g1)
ACCAG352469AG352470
length698693
length of high quality
(start - end)
573 (47 - 619)470 (75 - 544)
definitionCHROMAT_FILE: MSMg01no149_n23.b1 PHD_FILE: MSMg01no149_n23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:17 2005CHROMAT_FILE: MSMg01no149_n23.g1 PHD_FILE: MSMg01no149_n23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTTAGAACTCACAGACGCTAGGGGAAAGGCAGAGGAACTACAAA
GGCTGAAGGAGGGGGAGAAAGAAGTTAGACTTCCCAAAAGAAGTTACTGT
TAAAATATGACAGAGCAACGATCCCAAGACTCCAGAAGAGATGTATTTCT
TCCTAGAATGCCACATGAATGAGGAAGTGAAATGTTAGACATGTAGGTTT
CAGAGACTCTTTCTTCCTGTATTCTTTCTCAGAAAGAAGAGTGAGGGGGA
AATGCAAGCTATCAAAAACCAAAACAAACCAATACCCAAACCAACACATT
TAAATGAGGAGAGTATGTACGTAGGAGTCCTGCAATGGAACACTTAGCAC
AGATCTGACACGAAGGGGATTTAGAGCTGTGAGGATGCTTAGAGCAGAAG
AATGAAGGGTCTCAAAAGCAAGGTCCTCAAGACGAACAGGGCAAGCAGAC
ACGGCATGAAACGCTAGTGGAAGAGTTAATGGGTGGCTGACCAGTTACTC
TGTACAAAGTAATTAGCGCTATGAGGAGACACATGTATATAAGTCACCCT
GATCACAGAGAGGCGACAGATACAGGAAGATGAGAGACTTCCAAACTCCA
AAAGAAAAATCACAAGAGTATAACAGAACTTAGCTCCCAAGGATGAAT
NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGCTCCCCACCACTGCCCAACTGTTT
TGTTTTGTTTTAATTAATTTATTTTTTATTAGATATTTTCTTTATATACA
TTTCAAATACTATCCCGAAAGTTCCCTATACCCTCCCCCCGCCCCCACCC
TGCTCCCATACCCACCCACTCCTGCTTGTTGGCCCTGGCATTCCCCTGTA
CTGGGGCATATAAAGTTCGCAATACCAAGGGGCCTCTCTTGTCTTTTTAA
AGAAGAGTGATTTCATGATTTTACCTGTATGAGTACTTTGCATACATGTG
TATGTACCATGTGTGTGCCTGGCGCTCTCTGAAGTCTGAAGAGAGTGTCA
GTTACATTACCCAGCACTACAGTTAGGCATGCTTGTGAGCTGTCATGTGG
GTGCTGGGAATTGAACCTGGGTCTTCTTCTGTAAGCAGCTCCAAGTGACT
TCAGCAACTCCAGCTGTCCCGCCCCAGCATTTGTCTCTAGATTTAGTCAG
GTGCATGTGTGCGTATGTGCACATGGGGGAAGGTGACCTCTTAAGAGCCT
CGAGCTGGAGTGACAGCAGGTGTGAGCTGGATCATGTCCATGCAGCCCTC
TTGGTGTTTTTAAGAGCGAGTCTTTGTGTGTAGTACAGGCTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no149_n23.b1 MSMg01no149_n23.b1 CHROMAT_FILE:
MSMg01no149_n23.b1 PHD_FILE: MSMg01no149_n23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:17 2005
         (573 letters)



>mm_chr14_22118552_22119525
          Length = 974

 Score = 1064 bits (550), Expect = 0.0
 Identities = 565/570 (99%), Gaps = 1/570 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttag-aactcacagacgctaggggaaaggcagaggaactacaaaggctgaagg 63
           ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 gaattctttagaaacacacagacgctaggggaaaggcagaggaactacaaaggctgaagg 715

                                                                       
Query: 64  agggggagaaagaagttagacttcccaaaagaagttactgttaaaatatgacagagcaac 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 agggggagaaagaagttagacttcccaaaagaagttactgttaaaatatgacagagcaac 655

                                                                       
Query: 124 gatcccaagactccagaagagatgtatttcttcctagaatgccacatgaatgaggaagtg 183
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 gatctcaagactccagaagagatgtatttcttcctagaatgccacatgaatgaggaagtg 595

                                                                       
Query: 184 aaatgttagacatgtaggtttcagagactctttcttcctgtattctttctcagaaagaag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 aaatgttagacatgtaggtttcagagactctttcttcctgtattctttctcagaaagaag 535

                                                                       
Query: 244 agtgagggggaaatgcaagctatcaaaaaccaaaacaaaccaatacccaaaccaacacat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 agtgagggggaaatgcaagctatcaaaaaccaaaacaaaccaatacccaaaccaacacat 475

                                                                       
Query: 304 ttaaatgaggagagtatgtacgtaggagtcctgcaatggaacacttagcacagatctgac 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 ttaaatgaggagagtatgtacgtaggagtcctgcaatggaacacttagcacagatctgac 415

                                                                       
Query: 364 acgaaggggatttagagctgtgaggatgcttagagcagaagaatgaagggtctcaaaagc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 acgaaggggatttagagctgtgaggatgcttagagcagaagaatgaagggtctcaaaagc 355

                                                                       
Query: 424 aaggtcctcaagacgaacagggcaagcagacacggcatgaaacgctagtggaagagttaa 483
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 354 aaggtcctcaagacgaacagggcaagcagacacggcatgaaacactagtggaagagttaa 295

                                                                       
Query: 484 tgggtggctgaccagttactctgtacaaagtaattagcgctatgaggagacacatgtata 543
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 294 tgggtggctgaccagttactctgtacaaagtaattagcgctacgaggagacacatgtata 235

                                         
Query: 544 taagtcaccctgatcacagagaggcgacag 573
           ||||||||||||||||||||||||||||||
Sbjct: 234 taagtcaccctgatcacagagaggcgacag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 974
Length adjustment: 10
Effective length of query: 563
Effective length of database: 964
Effective search space:   542732
Effective search space used:   542732
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)