BAC Information

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BAC

Clone NameMSMg01-150G09
Chromosome14 (Build37)
Map Location 124,871,370 - 124,871,866
singlet/doubletsinglet
Overlap geneFgf14
Upstream geneVgcnl1, Itgbl1, LOC668700
Downstream geneGA_x5J8B7W4W3R-189177-188236
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-150G09.T7 (MSMg01no150_g09.b1)MSMg01-150G09.TJ (MSMg01no150_g09.g1)
ACCAG352851AG352852
length706711
length of high quality
(start - end)
590 (44 - 633)495 (75 - 569)
definitionCHROMAT_FILE: MSMg01no150_g09.b1 PHD_FILE: MSMg01no150_g09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:57 2005CHROMAT_FILE: MSMg01no150_g09.g1 PHD_FILE: MSMg01no150_g09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAAATCCTAACTTGAATAAGAACTTTACAACAAAGATGTTTACATGCA
TTTTCATTTGAAACTAGTTAACTAGCTAGACATTCATTATCTGTCACTAG
CTCCACAGCTTCATTGAGCATCTAAAACTATAATTTTTGTGTCTAACTTA
GCACTGAAATTTTATTTAGGTAAACACAGCCTCTTCTGCCCTTGATCCTA
CAATAAATTGTTCATTCTCAGTTTTACATCCCCAAGGAATGTATTCTTTA
ATTGTGAGTCCGCTTTTATCTTCCCATGACACATGAAGACTTGCAGAGTT
CTAGTTGCAATAGCCATATCACAGAAGGCCTTAACTGCAGTCCTATTATA
AAATGGCTTAATAACTACTAGTATAATTTTAGGAATTCTTTTTTATCAGA
TATTTTCTTTATTTACATTTCAAATGTTATCCTCTTTCCTTGTTTCATCC
ATAATTAAGAAATCATCTATAACATCACTACAAGACTACATTTTTGTTGA
TCTGTGAAAAATCTGCCCAATAGGGTTGGCTAATGCTCAGAAACTATATA
TAAATTTAACGTTGACAGGAAGGGCATATCACGAGCAGGAATCAATCCTG
ACCATGTTATTTATTGGGCCTTGCCTATGAGGGCTCATTCATCATAGTCC
ACAGTC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCTGGGAGAAGGGTCTATTGACAATG
AAAACAATAACAGCTTAGAGGAAGAGACCTCTGTAGTGCTTCAGTAGAGA
GTGATGGGAGTTGGAACTCAGGTGAATCCAGGAATTGTGACTTTTTTCTG
AAAGGTAGAACTTAATAAAACTCCTTGTGTCATCTTTGGTAATAGAAGAT
TTCCTCACACAAATCTGAATACAAGTTCAGAAGCTCACACAATTCCAGGC
TACCTAGTAATTTATTCCCTGTAAGTAAGCCTTACTATTTCTTGTCTTTT
AAGCTTCTGAATCTTAAATGGTTGGTCAGATCCTCAAACTAAAAACGAAA
AAAAAAAGGAACACCGAAGTGACTCATAATTACTGTTTAAATGAAACTGT
TTTTTTTTTCTTTCAAATAACACCTCTCTGCTATTTGGGTATAGGTAATT
AACAGCAGAAAAGGGGAATTACTGAACAAGACCAGAGTGGAAGGGTCTTC
TCCAGTGGGTGAGCAGTATTGTTAATCTTACCAGATGGTGAAAGTTATAT
TGTGTAATTCAGGAAAGTGTCCGATACCTAGCTAAAGGATAAATATCCCT
CTGTAATGGGCAGACCCTAATGCTGTTTTTCTAACTTGCCCCATACTTCC
GGACCTACCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no150_g09.g1 MSMg01no150_g09.g1 CHROMAT_FILE:
MSMg01no150_g09.g1 PHD_FILE: MSMg01no150_g09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:57 2005
         (495 letters)



>mm_chr14_124871170_124872066
          Length = 897

 Score =  919 bits (475), Expect = 0.0
 Identities = 491/497 (98%), Gaps = 2/497 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctgggagaagggtctattgacaatgaaaacaataacagcttagaggaagagacctctgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 cctgggagaagggtctattgacaatgaaaacaataacagcttagaggaagagacctctgt 638

                                                                       
Query: 61  agtgcttcagtagagagtgatgggagttggaactcaggtgaatccaggaattgtgacttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 agtgcttcagtagagagtgatgggagttggaactcaggtgaatccaggaattgtgacttt 578

                                                                       
Query: 121 tttctgaaaggtagaacttaataaaactccttgtgtcatctttggtaatagaagatttcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 tttctgaaaggtagaacttaataaaactccttgtgtcatctttggtaatagaagatttcc 518

                                                                       
Query: 181 tcacacaaatctgaatacaagttcagaagctcacacaattccaggctacctagtaattta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 tcacacaaatctgaatacaagttcagaagctcacacaattccaggctacctagtaattta 458

                                                                       
Query: 241 ttccctgtaagtaagccttactatttcttgtcttttaagcttctgaatcttaaatggttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 ttccctgtaagtaagccttactatttcttgtcttttaagcttctgaatcttaaatggttg 398

                                                                       
Query: 301 gtcagatcctcaaactaaaaacgaaa--aaaaaaaggaacaccgaagtgactcataatta 358
           |||||||||||||||||||||| |||  |||||||||||||  |||||||||||||||||
Sbjct: 397 gtcagatcctcaaactaaaaacaaaacaaaaaaaaggaacaatgaagtgactcataatta 338

                                                                       
Query: 359 ctgtttaaatgaaactgttttttttttctttcaaataacacctctctgctatttgggtat 418
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 ctgttcaaatgaaactgttttttttttctttcaaataacacctctctgctatttgggtat 278

                                                                       
Query: 419 aggtaattaacagcagaaaaggggaattactgaacaagaccagagtggaagggtcttctc 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 aggtaattaacagcagaaaaggggaattactgaacaagaccagagtggaagggtcttctc 218

                            
Query: 479 cagtgggtgagcagtat 495
           |||||||||||||||||
Sbjct: 217 cagtgggtgagcagtat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 897
Length adjustment: 10
Effective length of query: 485
Effective length of database: 887
Effective search space:   430195
Effective search space used:   430195
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)