BAC Information

Click to search

BAC

Clone NameMSMg01-150I09
Chromosome14 (Build37)
Map Location 48,380,715 - 48,381,064
singlet/doubletsinglet
Overlap genenone
Upstream geneCdkn3, Cnih, Gmfb, Cgrrf1, Samd4, Gch1, Wdhd1, Socs4, LOC670795, C130032J12Rik, Lgals3, Dlg7, LOC666895, Fbxo34, D14Ertd436e, EG625730, LOC100042787, Ktn1
Downstream gene4930447J18Rik, Map1lc3-ps2, Peli2, EG624367, LOC100041831, 6720456H20Rik, 4930572G02Rik, Otx2, LOC100041864
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-150I09.T7 (MSMg01no150_i09.b1)MSMg01-150I09.TJ (MSMg01no150_i09.g1)
ACCAG352938AG352939
length720715
length of high quality
(start - end)
393 (48 - 440)552 (77 - 628)
definitionCHROMAT_FILE: MSMg01no150_i09.b1 PHD_FILE: MSMg01no150_i09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:06 2005CHROMAT_FILE: MSMg01no150_i09.g1 PHD_FILE: MSMg01no150_i09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:06 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAAT
TCAGGGTTATCTTTGGATAGATTTTTGAGGCACGTCTGGACAACACAAGA
CTTGTCTCCCCAACCACTACCAGAAAAAAAAAAATTTAAATTTCTATTTT
AGTTACCTCTTAATGCATATGTGGTGGGTTAACTGAGAATGGCCCCCACA
GGCTCATAGATTTGAATGTGTGGTTCTTAGTGCATTGTTTAGGAAGGATT
TAGATGTATGACCTGTTTGGAGGAGTCGTCACTAGGAGTGGGCTTTGAGG
GTTCAAAGCCTGTGCCAGGCCTAGTCTCTTTCTGCCTTCTGTAGATGGCT
CAGGATGTAAGTTCTCAGCTACTGTTCCAGTACCATGCCCAATTGCTACA
TACTCTGCAGTGCCCCCCACAGACACTGATACTATAAGCAGGTCCACAAT
GAAGAACTCTCTTGTATAAGTTTGGTGTTTATTCATACCGGTAGAAGAGT
AACTAAGCAGATTTTGAAGTTCTAGAGGCTTTGGTACTTCTTATCCCCCA
ATGACCTATTGTAATACCCAGCTTCGCAATTGACTACATAAGACCCCCTA
AACCTCATGCATTCTCCCTCCCATAACTTGCTTATTTCCCCCCTGTTATT
TCCTACCCCCCCGTTTACCGTTTCCGGGTTTTACACACAAATACTCATCG
CTACCCCACCCCCCATCAAC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACCCTCCAAATGATCCCATGGAGA
CTGTCTTAGTTAGGGTTTTACTGCTGTGCACGGACCCCATGACCAAGGCA
ACTCTTAAAAGGACAACATTTAACTGGGGTTGGCTTATAGGTTCAGAGGT
TCAGTCCATTATCATCAAGGTGGGATTGTGGCAGCATCCAGGCAGGCATG
GTGCAGGAGGAGTTGAGAGTTCAAAGGGCCAAACCTATCCTATTTTATCT
TGGAACAACTGGCCTCTATCATAAAAAAAAAAAAAAAAAAAAAGCCTGAG
AACTTGGCCTGAAGCTGAATCCAATCTACACCCAAGTACCAGTACCAGGA
AGAACCCAACCAGTTGCCCTTGGCTAGAGTTACCCCCTAGCTACTTCCTA
GCAACAGTTAATCAGGCCATTCATGATTATATATGGTCTTGCTTCAGAGC
ATCCACCTATCGACTTACAATAGACATTCAGTTAGATGCTTGCCAGGCTA
GACTGACCACCCCCCAACCCCCCCTTTACTTCCATTTCCTATAAAACCTT
GTCCCTTTGAGAGTTCTGGGCTGCTTCACCAAACTGTCTAGTAGAGCTAG
CAGTAAGTAAGCTCAAACTCCAGTTTATAATAAAGAGACCCTAATGTGTT
TACATCAAAAACAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no150_i09.g1 MSMg01no150_i09.g1 CHROMAT_FILE:
MSMg01no150_i09.g1 PHD_FILE: MSMg01no150_i09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:06 2005
         (552 letters)



>mm_chr14_48380122_48381072
          Length = 951

 Score =  155 bits (80), Expect = 8e-42
 Identities = 280/370 (75%), Gaps = 62/370 (16%)
 Strand = Plus / Minus

                                                                       
Query: 201 ggccaaaccta-tcctatttt--atcttggaacaactggcctctatcataaaaaaaaaaa 257
           ||||||||||| ||| || ||  ||||| ||||  | | |||| ||| ||||| |||| |
Sbjct: 943 ggccaaacctattcc-atcttagatcttagaac--cagccctc-atc-taaaacaaaaca 889

                                                                       
Query: 258 aaaaaaaaaagcctgagaacttggcctga-agctgaatccaa-tctacacccaagtacca 315
           ||| |||| ||||||||||| || ||  | ||||||| |||| | | ||||||     ||
Sbjct: 888 aaacaaaacagcctgagaac-tgtcc-cacagctgaacccaagt-tgcaccca-----ca 837

                                                                       
Query: 316 gtaccaggaagaacccaaccag-ttgcccttggctagagttaccccctagctacttccta 374
            |||||||||| |||| | ||| ||| ||||||| |||||||| ||||||||||||||||
Sbjct: 836 -taccaggaaggacccca-cagcttgtccttggccagagttactccctagctacttccta 779

                                                                       
Query: 375 gcaacagtt-----aa----------------tcag-g--c---ca-----ttcatgatt 402
           |||||||||     ||                |||| |  |   ||     ||||||| |
Sbjct: 778 gcaacagttcatcgaagattagtctgattgtttcagtgtactttcagactgttcatgact 719

                                                                       
Query: 403 atatatggtcttgcttcagagcatccacctatcgacttacaatagacattcagttagatg 462
            |||| ||||||||||||||||  |||||| | | |||||||||||||||||||||||||
Sbjct: 718 gtatacggtcttgcttcagagcccccacctgttggcttacaatagacattcagttagatg 659

                                                                       
Query: 463 cttgccaggctagactgaccacc-ccccaacccccc---ctttacttccatttcctataa 518
           ||||||||||| || |  || || ||||| ||||||   | |||||||||||||||||||
Sbjct: 658 cttgccaggct-ga-t--cccccaccccatccccccgaac-ttacttccatttcctataa 604

                     
Query: 519 aaccttgtcc 528
           || |||||||
Sbjct: 603 aatcttgtcc 594


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 951
Length adjustment: 10
Effective length of query: 542
Effective length of database: 941
Effective search space:   510022
Effective search space used:   510022
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)