BAC Information

Click to search

BAC

Clone NameMSMg01-150I11
Chromosome14 (Build37)
Map Location 116,964,803 - 117,108,010
singlet/doubletdoublet
Overlap genenone
Upstream geneGpc5
Downstream geneGpc6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-150I11.T7 (MSMg01no150_i11.b1)MSMg01-150I11.TJ (MSMg01no150_i11.g1)
ACCAG352942AG352943
length713716
length of high quality
(start - end)
528 (42 - 569)462 (78 - 539)
definitionCHROMAT_FILE: MSMg01no150_i11.b1 PHD_FILE: MSMg01no150_i11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:06 2005CHROMAT_FILE: MSMg01no150_i11.g1 PHD_FILE: MSMg01no150_i11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:06 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,107,487 - 117,108,010)(116,964,803 - 116,965,264)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCACCTTCTTTACCTGCTTCAGCATATTCAAAGGCATTTGTGGATGGCAT
GAGGTACAGGTCCAGCTTCAGGCTTGTTCCTCACATAGGTACCAAAATAT
ACAAGCATTATTTAGCAAATAATTTGTTTCTTTCCTGCCCCTCTCCAAGG
ATCTAACACAAACAACTAGGCTTACTTTTAAACTACCCAGTATATGGACA
CCAGATCTAATATTGATATAAATAACAAAATACTGTACTTATGGATTAAA
TTTTCTATTCTATGCTTGTCTGTTTTTCAGATTATCTTGCCTATTAATAC
ATAGCCTTTTCTTCAAATAGAATTTATCTTTCATAACAATTAAAGTCTTT
CCACAACTCTGCTGCCGGTTTGGAAACAGATTAATAATGGAGTAAATGCT
GTCCTTACATCGTATCATCTGACTAGGAGGAATTTGCATTTTAGGCTATT
AATTCTCTGTAATTTAAATTTAAGTACCTTTTTTCTGTAAGCATAACTAG
AATCTTTTAATATAAACATTTATAAATATACGACTTTAGAGGCGTCATGT
CCTTATGGTATTGTGCGCAACATTCCCACCCATCTTCACCCGAGTCTATC
CCACTCCCCTCTTCTTGAGACCGGATTCTCACCTTTATCTCTGTGCTTCC
AACTGGTCAGTAT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATCACAGCAAATAGATCCTTTAT
ATTCTTACTGCCTATAATGAGGGTCATTCTACATTTGTTAAATATTTCTA
ATTTTAATTTGTTTTTGTTTGATATTATTTTTGTTTGATTGATTTTCTTA
GCATTAGAATGTTGAACTCATGAACACTGAGTTCAGTGTTCTACCACTGA
ATGATATCGCCAGTCATTCATATATATACATACTCAGTATAATTTTCAGA
CTGGTCTGGAACTTGTGTAATATTCCAGGATGCCTTATTAACATTCCTCC
TGCCTTTGTCTCCCAGGTGTTGATGTTTAGGCAAAACTATTACCACAGCC
TTCTGACCTGTGTCCGCCACTGTCCTATATATTAGGTCAGCAATGTGGTC
AAACCTACTTATATGCCAATAAATTTTCAGCACTTCCTTTTAGTTTACTT
TAAAATGCTCCAGGGCTAACTTTAAATTACATTTTATCAATACGAATAAA
TGTATTTTGAAATATAAATAAACTTTCTCTATCCAACTCTAGTTTTAGCA
AAAAGCGTTAGAACTCACTATTCCTATGCTGTACCAGAGACTGCATCTCA
AACTTATTTCCAGCCGCTTTACCGAATTCCTGAAATCTGTCGAAGGACTG
ACGACTTTCACCCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no150_i11.b1 MSMg01no150_i11.b1 CHROMAT_FILE:
MSMg01no150_i11.b1 PHD_FILE: MSMg01no150_i11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:06 2005
         (528 letters)



>mm_chr14_117107284_117108210
          Length = 927

 Score =  938 bits (485), Expect = 0.0
 Identities = 515/525 (98%), Gaps = 1/525 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccaccttctttacctgcttcagcatattcaaaggcatttgtggatggcatgagg 63
           |||||||||| |||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 ggaattccactttcactacctgcttcagcatattcaaaggcatttgtggatggcatgagg 668

                                                                       
Query: 64  tacaggtccagcttcaggcttgttcctcacataggtaccaaaatatacaagcattattta 123
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 tataggtccagcttcaggcttgttcctcacataggtaccaaaatatacaagcattattta 608

                                                                       
Query: 124 gcaaataatttgtttctttcctgcccctctccaaggatctaacacaaacaactaggctta 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 gcaaataatttgtttctttcctgcccctctccaaggatctaacacaaacaactaggctta 548

                                                                       
Query: 184 cttttaaactacccagtatatggacaccagatctaatattgatataaataacaaaatact 243
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 547 cttttaaactacccagtatatggacaccagatct-atattgatataaataacaaaatact 489

                                                                       
Query: 244 gtacttatggattaaattttctattctatgcttgtctgtttttcagattatcttgcctat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 gtacttatggattaaattttctattctatgcttgtctgtttttcagattatcttgcctat 429

                                                                       
Query: 304 taatacatagccttttcttcaaatagaatttatctttcataacaattaaagtctttccac 363
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 428 taatacatagccttttcttcaaatagaatttatctttcataacaattaaattctttccac 369

                                                                       
Query: 364 aactctgctgccggtttggaaacagattaataatggagtaaatgctgtccttacatcgta 423
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 aactctgctgctggtttggaaacagattaataatggagtaaatgctgtccttacatcgta 309

                                                                       
Query: 424 tcatctgactaggaggaatttgcattttaggctattaattctctgtaatttaaatttaag 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 tcatctgactaggaggaatttgcattttaggctattaattctctgtaatttaaatttaag 249

                                                        
Query: 484 taccttttttctgtaagcataactagaatcttttaatataaacat 528
           ||  |||||||||||||||||| ||||||||||||||||||||||
Sbjct: 248 tattttttttctgtaagcataattagaatcttttaatataaacat 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 927
Length adjustment: 10
Effective length of query: 518
Effective length of database: 917
Effective search space:   475006
Effective search space used:   475006
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no150_i11.g1 MSMg01no150_i11.g1 CHROMAT_FILE:
MSMg01no150_i11.g1 PHD_FILE: MSMg01no150_i11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:06 2005
         (462 letters)



>mm_chr14_116964603_116965464
          Length = 862

 Score =  849 bits (439), Expect = 0.0
 Identities = 457/463 (98%), Gaps = 2/463 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcacagcaaatagatcctttatattcttactgcctataatgagggtcattctacatttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atcacagcaaatagatcctttatattcttactgcctataatgagggtcattctacatttg 260

                                                                       
Query: 61  ttaaatatttctaattttaatttgtttttgtttgatattatttttgtttgattgattttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttaaatatttctaattttaatttgtttttgtttgatattatttttgtttgattgattttc 320

                                                                       
Query: 121 ttagcattagaatgttgaactcatgaacactgagttcagtgttctaccactgaatgatat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttagcattagaatgttgaactcatgaacactgagttcagtgttctaccactgaatgatat 380

                                                                       
Query: 181 cgccagtcattcatatatatacatactcagtataattttcagactggtctggaacttgtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cgccagtcattcatatatatacatactcagtataattttcagactggtctggaacttgtg 440

                                                                       
Query: 241 taatattccaggatgccttattaacattcctcctgcctttgtctcccaggtgttgatgtt 300
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taatagtccaggatgccttattaacattcctcctgcctttgtctcccaggtgttgatgtt 500

                                                                       
Query: 301 taggcaaaactattaccacagccttctgacctgtgtccgcca-ctgtcctatatattagg 359
           ||||||||||||||||||||||||||||||||||||  |  | |||||||||||||||||
Sbjct: 501 taggcaaaactattaccacagccttctgacctgtgtt-gtgaactgtcctatatattagg 559

                                                                       
Query: 360 tcagcaatgtggtcaaacctacttatatgccaataaattttcagcacttccttttagttt 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tcagcaatgtggtcaaacctacttatatgccaataaattttcagcacttccttttagttt 619

                                                      
Query: 420 actttaaaatgctccagggctaactttaaattacattttatca 462
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 actttaaaatgctccagggctaactttaaattacattttatca 662


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 862
Length adjustment: 10
Effective length of query: 452
Effective length of database: 852
Effective search space:   385104
Effective search space used:   385104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)