BAC Information

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BAC

Clone NameMSMg01-150I18
Chromosome14 (Build37)
Map Location 117,263,605 - 117,263,833
singlet/doubletsinglet
Overlap genenone
Upstream geneGpc5
Downstream geneGpc6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-150I18.T7 (MSMg01no150_i18.b1)MSMg01-150I18.TJ (MSMg01no150_i18.g1)
ACCAG352956AG352957
length722731
length of high quality
(start - end)
229 (72 - 300)474 (77 - 550)
definitionCHROMAT_FILE: MSMg01no150_i18.b1 PHD_FILE: MSMg01no150_i18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:08 2005CHROMAT_FILE: MSMg01no150_i18.g1 PHD_FILE: MSMg01no150_i18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TAXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCCAACACGAGCCGCGGAA
TTCCAAAAATTACCACCCCCAGTAAGGACTGGATAGTGTGTGATGTATGC
ACACATTCCTGTCATGTCTGTTTCAAGGAGACATAAAAGAATTTATGAAA
GCAAAAAAGCACTCCATGAAGAAAGTGCAGTGTGTTCTGTTAGATATGGG
GAGGGGGGAGGCACTGAAGTTTTCTGGAGTAATTGGGAGGGAAGAAATAC
AAGAAGAAAAAATTCTGTTGAATGTTAAACTTTGAGAATTGTTTCAACTG
GAGAAAAGGAGGAAGAACACTTTTATAACGGAATTTTTGGAAAACAGAGC
TTAGAATGTGTAGGACACATTCTTTTGAAAACTATGACACAAATTTATAA
ATATAAATGAAAACCCCCCCGAATATTTTTTTAAACTATGAAATTCTACC
ATAAATTACTATAAACATAGAAATGATAACTCTCTTTTGAGACTAATTAG
GAAATGAACAGAAATGCTCTCATGAAAATATCTCCTGCTTGCAAACAGCC
TTTCTTCCTCTTCCTAAACCATCTGAAAACACCTTGCGATTTTCAGCTAA
GAGAGAGTAAATGGCTGTTTCCTTAAGTTAACGCCATGACCTCTGGGCCC
TAGAAACTTCAAGTTCCATACCTTTTCTGGAATTCAAATGGCTTGCACCT
CACTCCGATACTAGCCACCACG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGGTAGCCTATGTATTTGCCACC
ACACCATTATGATGGACAGAAAACACATAATCCCTGAAATATATATTTTT
TTTTTAATATCAGAGAACCTAGTTGCTAAAACCTAATTGATCTTTACCAA
CAATACATCTGATAGAGGATCAGTTTGTTGCTCAGCACTCATGAGATATG
CTTCTTCCTGCAGGAAATGGGAGCTAACGTATAGAACGGCATCTACACAA
TAGACAATGTGAAATCCTTTGGAGTACTCTGCCCTAATTGGGATGTTTTC
ATCAAACCTCTGCTTGATTCAGGGTCCAGGGACATATACAGAAGAGAGGA
GAGCTAGATTATAGGAGCCAGCGGGAATAGATGAATCCAGGAAAATAACA
TCTTACAGACACAACAGAAGAGATGTGCATATGAACTCACAGAGACTGGC
AGCATGCCCATATGAACTCACAGAGATGCTGGTATCATGCACAAGACCAA
CACAAGTTCAAAGTAAACAAAATTCCAGCACAGAGAACAGAAAGTAGACC
AAAAAGTATCACAACCGTTTTTATCCTCTACCTCAGCTATTTGTCATGAT
TTCAGAATAATCCTACTGCATTGTCCTGCATGTATGGCACGCTAGTGCGC
CACTAACCTCCATGAGCCAGACTCTCTACAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no150_i18.b1 MSMg01no150_i18.b1 CHROMAT_FILE:
MSMg01no150_i18.b1 PHD_FILE: MSMg01no150_i18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:08 2005
         (229 letters)



>mm_chr14_117263405_117264033
          Length = 629

 Score =  443 bits (229), Expect = e-129
 Identities = 229/229 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtaaggactggatagtgtgtgatgtatgcacacattcctgtcatgtctgtttcaaggaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 gtaaggactggatagtgtgtgatgtatgcacacattcctgtcatgtctgtttcaaggaga 370

                                                                       
Query: 61  cataaaagaatttatgaaagcaaaaaagcactccatgaagaaagtgcagtgtgttctgtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 cataaaagaatttatgaaagcaaaaaagcactccatgaagaaagtgcagtgtgttctgtt 310

                                                                       
Query: 121 agatatggggaggggggaggcactgaagttttctggagtaattgggagggaagaaataca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 agatatggggaggggggaggcactgaagttttctggagtaattgggagggaagaaataca 250

                                                            
Query: 181 agaagaaaaaattctgttgaatgttaaactttgagaattgtttcaactg 229
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 agaagaaaaaattctgttgaatgttaaactttgagaattgtttcaactg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 229
Length of database: 629
Length adjustment: 9
Effective length of query: 220
Effective length of database: 620
Effective search space:   136400
Effective search space used:   136400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)