BAC Information

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BAC

Clone NameMSMg01-151K24
Chromosome14 (Build37)
Map Location 74,746,784 - 74,747,023
singlet/doubletsinglet
Overlap genenone
Upstream geneItm2b, LOC100043152, Med4, Nudt15, Sucla2, LOC100043734, EG629578, LOC629583
Downstream geneHtr2a, LOC668508, Esd, Lrch1, ENSMUSG00000075519, LOC100043169, 5031414D18Rik, 4921509B22Rik, LOC100043176, Lcp1, Cpb2, Zc3h13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-151K24.T7 (MSMg01no151_k24.b1)MSMg01-151K24.TJ (MSMg01no151_k24.g1)
ACCAG353781AG353782
length728720
length of high quality
(start - end)
241 (79 - 319)---
definitionCHROMAT_FILE: MSMg01no151_k24.b1 PHD_FILE: MSMg01no151_k24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:34 2005CHROMAT_FILE: MSMg01no151_k24.g1 PHD_FILE: MSMg01no151_k24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTAAATTTGCGGCGCTAAACGACTACTATATTCTTACTACCGCGGAATTT
ATACCTCTTCCAACCACACAAACCCANAGGAAACTGAAATAGAGGGAGGA
TTTTCCTTGACCTAGGAAGGTTATCTGTACAAAGCCAAACTTAACACTGG
TAAACTATTTAAGTTTTTTTACCCTTAACATCAAAAATAAAAATGATGTC
TACATTTGGCACTGCTGTACACATTATACTAGAGCTTGTTACATCATCTA
GATGAGGACATGAAAATAGAGAGCATCTACCCCAGAAGGGAAACAATGAT
GCTATGCTACTCCCATTATTTTTTATCCACGGAAAGTCATCAGGGCAGTG
CAGCTTTAAAATTAATAAAAATTCTAAGTGGGTTGTATAATGCTGCCAGT
TACAAATTCAACACACCAAACTCAATGTGGGAAAACACTGCTAGTTAAAG
TCAAAGCCCACCATGACCCGATAGCCTCTAGGCTTAGCACAATATAGGAG
ACTCTCATTTGTGGCAGGTATCTCCTTATAGAGCCTTGTCCAGGGGATTC
TTTTATTCTTTTCTTATTGAACACTTTCTTTATTTACATTTCAAATGTTA
TCCCCTTTCCCGGTTTCTCCCCAGAAGCCCACATCCCTCCCCCTCTCCCC
TACTTCTATGAGGTTGTTCCCCCACCCATCCACCCCCTCCTGCTTCCCCA
CTCCGGCATTCTCTACACTGGGGCATCG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTCTGCTGAGAATGATCTAATGGCAAATCCATAACATGAACACAGC
TTCCTTTACTTAACCATCCGGATTATGCTGATTAATAAAAGATAATTATT
CCTTGTCGAACAGGACATAATGTTTATTATTTTAAAAAAGGGTGCTTTTA
TATGTTGACGAGTATGAGTGAAAACGACAACCATGCCTCTTGTGTAGATT
GTGATATGAGCGTAGATGTCCCGAGCGAATGTCCTTGTTTTCCATGCGCA
AAGTTTTCTGAGGAACTGTTGTGACAAGCCCTAACTGTTACTCGCCTAAA
TGAAACTCCATTTCAGACGCGGGCTGGTGAATAGCACAGATTCTGCGGTA
TGACCCCCACAACCAGGATGGATCATAGGCCGAAAGGGCATACAGATGAC
TTCTGCTTATCCCACATCCGCGATGGTCTTAGCCCTGTGTCCTCCCCACC
GTACTGCCATTATCCCATTCGACCGTACGCTTCTCTCCCCATATATATCC
CCTCTATATACGCCCGCCTTTCTCACATTGGCACATCCCTTACCGCTCCC
CCTTCTAACTCTTGTATCTCCTATCCCCCGTTTGCTCTCCCCCCCTTCAT
TTCGTTTCCCCTACTCCGGTAATACACTTTGTATACGTCGCCGCAAAAAT
TGGAATTCTTGAAATTTGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no151_k24.b1 MSMg01no151_k24.b1 CHROMAT_FILE:
MSMg01no151_k24.b1 PHD_FILE: MSMg01no151_k24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:15:34 2005
         (241 letters)



>mm_chr14_74746584_74747224
          Length = 641

 Score =  456 bits (236), Expect = e-133
 Identities = 239/240 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggaaactgaaatagagggaggattttccttgacctaggaaggttatctgtacaaagccaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggaaactgaaatagagggaggattttccttgacctaggaaggttatctgtacaaagccaa 260

                                                                       
Query: 61  acttaacactggtaaactatttaagtttttttacccttaacatcaaaaataaaaatgatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acttaacactggtaaactatttaagtttttttacccttaacatcaaaaataaaaatgatg 320

                                                                       
Query: 121 tctacatttggcactgctgtacacattatactagagcttgttacatcatctagatgagga 180
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 321 tctacatttggcactgctgtacacattatactagagtttgttacatcatctagatgagga 380

                                                                       
Query: 181 catgaaaatagagagcatctaccccagaagggaaacaatgatgctatgctactcccatta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catgaaaatagagagcatctaccccagaagggaaacaatgatgctatgctactcccatta 440


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)