BAC Information

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BAC

Clone NameMSMg01-151P14
Chromosome14 (Build37)
Map Location 46,681,037 - 46,681,687
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041591, 5730420B22Rik, LOC100041611, 6330416L11Rik, Ero1l, Psmc6, Styx, Gnpnat1, Plekhc1, EG382884, Ddhd1, EG637379, LOC666834, LOC100041685, LOC625377
Downstream geneLOC218963, LOC100041724, Bmp4, LOC100041732, LOC100041754, Cdkn3, Cnih, Gmfb, Cgrrf1, Samd4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-151P14.T7 (MSMg01no151_p14.b1)MSMg01-151P14.TJ (MSMg01no151_p14.g1)
ACCAG353991AG353992
length728852
length of high quality
(start - end)		655 (47 - 701)49 (76 - 124)
definitionCHROMAT_FILE: MSMg01no151_p14.b1 PHD_FILE: MSMg01no151_p14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:56 2005CHROMAT_FILE: MSMg01no151_p14.g1 PHD_FILE: MSMg01no151_p14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCACCCTACTGCGGCAATTTAATACTCACTTGGGAAAGATCTCATG
GCTCGTTATCCCTGGTATAGCACAGCTTTTGGAACCCAAAAAGACTATAA
AACTTCTACAGTGAGAGGTAGGAACAGAAAAATGCTGTTTCTAAAAATAA
TAAAATAACTTTTGTTGCTCGAGATACCAGTATCAAAAGCTTAACCCAGT
TAGCTTTATGTGATTTTTAGTAACCTTCAAGTACAGAAACCATGCAAACC
TTCACAAACCCGTGCTTAAAGGTCTGAGGTCTGATAATAGGAACTAGAAG
GCACACAGACAAGAGACTCTACTACTTCAAGGGTAGAGAACATAGCACTG
CAATTGATGGGGCTTCTTCAACACCCCTGCCCCTACCCCATGCCAACAGT
ATGTACTTATATGTGTATATGAGTGTTCGTGTGCACGGGCCTAGAACCTG
GTCGACTCTCTTGCCTTTGCATCAGCAAGAAAGGAGTGCAAAACATCCTT
GTCTCCCTCTAACTCTGTTAGACGAAGGCAGTGGCATCCACCAAGCTCCT
AAAGGTTTCCAGTTGGGTTGCAGAGATCTGTAGCGTGCTCTCTGCACTAG
GTCTCATCTTGCAGNCCTGCTACCAGATGAAAGCAAAAGCAAAAAAGCAG
TAGCAAAGGCCAGGCTCTGTCTTCCTGN

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCCAAAGAAGGTGCTTGTGGGAGAA
TGAGAAAGAGGGGGGTGGGAGGAGACTCNTNNTNTCGCTCTAGACTCATG
ACAGCCGCACAGAGCAATTAGGCAACTTGAAGTTTCCATCAGTTTATTGT
TATCATTCTGAAGGGAGCATTTCTCCTCCTAACAGCCTCAGATTTCCGAA
TAGCCAAAGAATCACTGATACATTCATGCTCGTCTTCGAACAGATTGAAC
TCTTGCCGTCTGTCATTTTTTTTTTTTTAATAAATATAACCTATCACCCC
GTTCCTATATTATACCCACCCCTTCTTCTCACGTATGATCGTTATGTTTT
TGTTTTTCTTTTTTTTTTACCCAAACATTCCCCCCCAAAATAATANTTGT
GTTATATTATTAACGCCTTATATTTTTTAATTTTGCATCAAATTTTTTTT
TACATTCTCACCCACTCAGTTTCCCTCCCCTTATATTTTCCTTACCTTCC
CTCCCACCGTCCCGCTCTCCTTTTTCTCCCATCTCCCTCCTCTCCTTTAC
CCCTTTTTTTTATTTTTTTCTAATTTCCTGAGTGTTAATGTCATTATTGC
TCCACTACTTAACCCTTTTATTAGTTACTTCATTCCTTATAACCATTATC
TATTATACCCACTTTCTGATTTTACTCCTCTTTCTTTTTTCCCCTGCTCG
TTCCTTTCACTTATCCCCTTGCTCATACACCCTTGTACATCATGTTTCTA
TCTTTTATTTAACCTATGCTTTAATATTTTACTCCTATTTGTTCTTTCTC
TT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no151_p14.b1 MSMg01no151_p14.b1 CHROMAT_FILE:
MSMg01no151_p14.b1 PHD_FILE: MSMg01no151_p14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:15:56 2005
         (655 letters)



>mm_chr14_46680833_46681887
          Length = 1055

 Score = 1207 bits (624), Expect = 0.0
 Identities = 644/651 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaccctactgcggcaatttaatactcacttgggaaagatctcatggctcgttatc 64
           ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855 gaattcaccctacagaggcaatttaatactcacttgggaaagatctcatggctcgttatc 796

                                                                       
Query: 65  cctggtatagcacagcttttggaacccaaaaagactataaaacttctacagtgagaggta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 cctggtatagcacagcttttggaacccaaaaagactataaaacttctacagtgagaggta 736

                                                                       
Query: 125 ggaacagaaaaatgctgtttctaaaaataataaaataacttttgttgctcgagataccag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 ggaacagaaaaatgctgtttctaaaaataataaaataacttttgttgctcgagataccag 676

                                                                       
Query: 185 tatcaaaagcttaacccagttagctttatgtgatttttagtaaccttcaagtacagaaac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 tatcaaaagcttaacccagttagctttatgtgatttttagtaaccttcaagtacagaaac 616

                                                                       
Query: 245 catgcaaaccttcacaaacccgtgcttaaaggtctgaggtctgataataggaactagaag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 catgcaaaccttcacaaacccgtgcttaaaggtctgaggtctgataataggaactagaag 556

                                                                       
Query: 305 gcacacagacaagagactctactacttcaagggtagagaacatagcactgcaattgatgg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 gcacacagacaagagactctactacttcaagggtagagaacatagcactgcaattgatgg 496

                                                                       
Query: 365 ggcttcttcaacacccctgcccctaccccatgccaacagtatgtacttatatgtgtatat 424
           |||||||| ||||  | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 ggcttctttaacagtcttgcccctaccccatgccaacagtatgtacttatatgtgtatat 436

                                                                       
Query: 425 gagtgttcgtgtgcacgggcctagaacctggtcgactctcttgcctttgcatcagcaaga 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 gagtgttcgtgtgcacgggcctagaacctggtcgactctcttgcctttgcatcagcaaga 376

                                                                       
Query: 485 aaggagtgcaaaacatccttgtctccctctaactctgttagacgaaggcagtggcatcca 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 aaggagtgcaaaacatccttgtctccctctaactctgttagacgaaggcagtggcatcca 316

                                                                       
Query: 545 ccaagctcctaaaggtttccagttgggttgcagagatctgtagcgtgctctctgcactag 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 ccaagctcctaaaggtttccagttgggttgcagagatctgtagcgtgctctctgcactag 256

                                                              
Query: 605 gtctcatcttgcagncctgctaccagatgaaagcaaaagcaaaaaagcagt 655
           |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 255 gtctcatcttgcagccctgctaccagatgaaagcaaaagcaaaaaagcagt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space:   674025
Effective search space used:   674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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