BAC Information

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BAC

Clone NameMSMg01-153D18
Chromosome14 (Build37)
Map Location 85,473,499 - 85,474,143
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043280, LOC100043285, Pcdh17, 9630013A20Rik, LOC629794
Downstream geneLOC668603
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-153D18.T7 (MSMg01no153_d18.b1)MSMg01-153D18.TJ (MSMg01no153_d18.g1)
ACCAG354890AG354891
length7341,074
length of high quality
(start - end)		646 (67 - 712)---
definitionCHROMAT_FILE: MSMg01no153_d18.b1 PHD_FILE: MSMg01no153_d18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:33 2005CHROMAT_FILE: MSMg01no153_d18.g1 PHD_FILE: MSMg01no153_d18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTATTGCTTTCTCATTGCAGAGGGCAAACTCTGCTATATGACTCCACCTG
TGGACATCAAGTGGTAGAGAGAAAAAGGAAGAGACTATGTATTTTATTTC
TTTCACTGCGTGAAGTTTCCTTTTTCTCTCCTTTTATTTTCACAGAGTGA
ATTGCACAGGATAGTCTTGAAATTACAATCTTCTTGACTCATCATCCCGA
GTAGCTGGGATTAGAAATGGGTAACCACCATGAATTTTAATAAGAAAGGC
ATAATGAATTCTTCAACTTCTCTCTTCTACAGTCAGTATCTGTCACTTTG
TCACACTGCTTTATGCCCCATATGCTACTACAGACTCCTCTTTCCCAAAA
GCTACTAGGCAAAATATTAGTCTATTGCTATCTTACTATGTGTTCATTTG
TAATAATTTCCACATTGATATACATTCACTGTACTGATATTGTGCATGTC
CATTCCAGAAATATTAGATTGTTAATCTCCTTTTTGAATGAAAAATTAAT
CCTTATATCTTTGTCATTTTTAATTTGTTATTTTATTTATTTACAATTCA
NATGGTATCCACCTTCCTGGTTTCCCCTCTGCAAACCCCCTATCACATTC
CCCTTTCCCATACTTCTGTGAGGAAGTTCTAACACCTACCCATCCTCTCA
CAGCCCTAGTGTTTCTCTACATTGGGGCATTGAG

TTTTTCATCTTTTTCGTGACGCGCGGTTGGGCTCTTCCCCGCATTTCGGC
GCCCCCGCGCCTTGTCAGGGGGGAGGTGGGGGCGAGCCTCTCAAATTATT
ATCGTCCTTGCGTCGGGGTTATTTATTCGTTCGGGTGTGCTGGTCTATTC
TTTGTGGCGTCTGGCTTTGGGGGCGGCCCCCGGCGGCCGCTAAACGGCAT
GGAAGGGGCGGGATGTAAAGTTATATTAAAGTTTTGGGGGAGGAGGAGCG
TGGGCGAGGCGCTAGGGCGGTTGGTGGGTTTAGGAGTTTCTCAGAATTTT
TATGGCTTCGGAGGGGTGCGGCTTGCCGGGTAACGTGTACGTTGGGGGGC
GGTTTTGGGGGTTGGGTTGGTGTGGTTCAGATGCTTTGACCGTTCTGGCC
GGGCCGACTTTATAAATGGTTTTTTTTTTGCGTCGTGTGGGTTAGAATGG
TATTTGACGGAGTAGCGGCGCGAGTGGTTGCGCGTGCGTGGGGGTAGGGG
GCCGGGCGTCGACCGGTGGAGCGCGCCGGTTCGCGATATCTCCGTGGTTG
AAGGGGCGGGTGGGAACGAGTGCGCCGGCTAAGTAGTGTATGCTAGCGTG
CAGGCGCGCGTATGTAACGTTTGTCTCGGTGTGGGCTTTCAGCGCGCGTT
TGATTTTGGTGTTGTTTCGGCGCTGCGGGGGTCCCGAGGTGTGTAGTGTT
TGAGGTGGTGGGGGTGTGTGGGCGGGGGGCAGGATGAAATGGGTAGGTGG
GTGTGCTGGGGGGGTGTTGTGGAGGGAGGGACAGCGAGGGCGGAAGTGGG
GAGGGTAGAGCAAGTGGGCGGAGTGCGTTGTGTCGTTTTTTTCGCATTCG
GGCTTGTGATCCGCGCGCGGCCTCGTTTTCTCGGGCGCGATTTGCTGCAT
GTTAATGGTAGCGGCGCCGCGTCGGGGTTGGGTTGAATGAGTTCAGCGTG
TGTGGACTGGCGTTCGCCGAAAATAGTTGATATACTAAGACATCATCTGT
ATTTGTTTTAGTGTGATGCGATGCGGATCGATATGAACCGTGCGGTACGG
TTACTTAATAATATACGTGCGCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no153_d18.b1 MSMg01no153_d18.b1 CHROMAT_FILE:
MSMg01no153_d18.b1 PHD_FILE: MSMg01no153_d18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:17:33 2005
         (646 letters)



>mm_chr14_85473228_85474273
          Length = 1046

 Score = 1187 bits (614), Expect = 0.0
 Identities = 637/645 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcagagggcaaactctgctatatgactccacctgtggacatcaagtggtagagagaaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 916 gcagagggcaaactctgctatatgactccacctgtggacatcaagtggtagagagaaaaa 857

                                                                       
Query: 61  ggaagagactatgtattttatttctttcactgcgtgaagtttcctttttctctcctttta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856 ggaagagactatgtattttatttctttcactgcgtgaagtttcctttttctctcctttta 797

                                                                       
Query: 121 ttttcacagagtgaattgcacaggatagtcttgaaattacaatcttcttgactcatcatc 180
           |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 796 ttttcacagagtgaattgcacaggatagccttaaaattacaatcttcttgactcatcatc 737

                                                                       
Query: 181 ccgagtagctgggattagaaatgggtaaccaccatgaattttaataagaaaggcataatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 ccgagtagctgggattagaaatgggtaaccaccatgaattttaataagaaaggcataatg 677

                                                                       
Query: 241 aattcttcaacttctctcttctacagtcagtatctgtcactttgtcacactgctttatgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 aattcttcaacttctctcttctacagtcagtatctgtcactttgtcacactgctttatgc 617

                                                                       
Query: 301 cccatatgctactacagactcctctttcccaaaagctactaggcaaaatattagtctatt 360
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 616 cccatatgctactacagactcctctttcccaaaagctactaggtaaaatattagtctatt 557

                                                                       
Query: 361 gctatcttactatgtgttcatttgtaataatttccacattgatatacattcactgtactg 420
           | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 556 gttatcttactatgtgttcatttgtaataatttccacattgatatacatttactgtactg 497

                                                                       
Query: 421 atattgtgcatgtccattccagaaatattagattgttaatctcctttttgaatgaaaaat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 atattgtgcatgtccattccagaaatattagattgttaatctcctttttgaatgaaaaat 437

                                                                       
Query: 481 taatccttatatctttgtcatttttaatttgttattttatttatttacaattcanatggt 540
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 436 taatccttatatctttgtcatttttaatttgttattttatttatttacaattcaaacggt 377

                                                                       
Query: 541 atccaccttcctggtttcccctctgcaaaccccctatcacattcccctttcccatacttc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 atccaccttcctggtttcccctctgcaaaccccctatcacattcccctttcccatacttc 317

                                                        
Query: 601 tgtgaggaagttctaacacctacccatcctctcacagccctagtg 645
           |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 316 tgtgaggaagctctaacacctacccatcctctcacagccctagtg 272


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1046
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1036
Effective search space:   658896
Effective search space used:   658896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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