BAC Information

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BAC

Clone NameMSMg01-154A17
Chromosome14 (Build37)
Map Location 40,769,734 - 40,770,223
singlet/doubletsinglet
Overlap genenone
Upstream geneNrg3
Downstream geneLOC100040439, LOC218945, LOC100040470, LOC382876, Sh2d4b, Tspan14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-154A17.T7 (MSMg01no154_a17.b1)MSMg01-154A17.TJ (MSMg01no154_a17.g1)
ACCAG355446AG355447
length671669
length of high quality
(start - end)
588 (40 - 627)576 (73 - 648)
definitionCHROMAT_FILE: MSMg01no154_a17.b1 PHD_FILE: MSMg01no154_a17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:18:34 2005CHROMAT_FILE: MSMg01no154_a17.g1 PHD_FILE: MSMg01no154_a17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:18:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGAATT
CCTTATTCTCCAAACCATGAAAAAAAAATCTCAGCAGGCAGAAATTGCAG
GGGAGATGGGAAGCCTCTCTGCGGTGAGCACAATTTCATGTGATCAACTG
ACAAGTCCTTTTCAAGATGGAAAAGGCCACTCTTCAGGAATTGGGAAAAC
AATTTGACAGATTGTACTGAGTCTGCAGACGTCAGACTTCACGGTGCATC
ACAGTTTTACCACTCAAGGGCTTCTTCAAACAGGAATTGCTGTGGCCCAC
CCACAATTTCTCACCTAGCCAGTCTGCTGTGCAGCCCACAACAGCTGCTG
TGAAGGGGTTTCTTGATAAGGTTGGCATTCTGGCTCAGTGTTCGAGGGAA
CAGGGTTGCTTGCTTTATCATCAGCCACTGGTACAATGGACACAATACAA
GCAACTTTTCCAGACTGAGTTAGATTGCTTTGTTTCTGTGCACACAAATT
TATGGTAATACATCACTTTTGATGCTGCATCATTTTTCCTATTAAAATTT
ATAATGAAAACCCTTCCTTTGATGTATTTTCAGAGATATACCTCTAGAGA
TGTTTATTTTAATAGTGAGCAATTTAATTGCAACAATTTTTAAAATTCAG
ATAAATGAATGATAATACTAC
CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTGGGTTCTTTCCAGCTTCTGGCTATTAT
AAATAAGGCAGCTATGCATATAGTGGAGCATGTGTCCTTATTACCAGTTG
GAACATCTTCTGGATATTCCCAGGAGAGGTACTGCGGGATCCTCCGGTAG
TACTATGAGCAATTTTCTGAGGAACCGCCAGACTGATTTCCAGAGTGGTT
GTACAAGCTTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTCTCCA
CATCCTTGCCAGCATCTGCTGTCACCTAAGTTTTTGATCTTAGCCATTCT
GACTGGTGTGAGGTAGAATCTCAGGGTTGTTTTGATTTGCATTTCCCTGA
TGATTAAGGATGCTGAACATCTTTTCAGGTGCTTCTCAGCCATTCCGTAT
TCCTCAGGTGATAATTCTTTGTTTAGCTCTGAGCCCCATTTTAATGGGGT
TATTTGATTTTCTGGAGTTCAGCTTCTTGAGTTCTTTATATATATATATA
TATATATATATATATATTGGATATTAGTCCCCTATCTGAGTTAGGATAGT
TAAAGATCCTTTCCCAATCTGTTGGTGGCCTTTTTGTCTTATTGATGGTG
TCTTTTGCCTTACAGAAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no154_a17.b1 MSMg01no154_a17.b1 CHROMAT_FILE:
MSMg01no154_a17.b1 PHD_FILE: MSMg01no154_a17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:18:34 2005
         (588 letters)



>mm_chr14_40769236_40770223
          Length = 988

 Score =  924 bits (478), Expect = 0.0
 Identities = 487/490 (99%)
 Strand = Plus / Minus

                                                                       
Query: 99  atgtgatcaactgacaagtccttttcaagatggaaaaggccactcttcaggaattgggaa 158
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 988 atgtgatcaactgacaagtccttttcaagatggaaaaggccactcttcaggaattgggaa 929

                                                                       
Query: 159 aacaatttgacagattgtactgagtctgcagacgtcagacttcacggtgcatcacagttt 218
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 928 aacaatctgacagattgtactgagtctgcagacgtcagacttcacggtgcatcacagttt 869

                                                                       
Query: 219 taccactcaagggcttcttcaaacaggaattgctgtggcccacccacaatttctcaccta 278
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 868 taccactcaagggcttcttcaaacaggaattgctgtggcccacccacaatttctcaccta 809

                                                                       
Query: 279 gccagtctgctgtgcagcccacaacagctgctgtgaaggggtttcttgataaggttggca 338
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 808 gccagtctgctgtgcagcccacaactgctgctgtgaaggggtttcttgataaggttggca 749

                                                                       
Query: 339 ttctggctcagtgttcgagggaacagggttgcttgctttatcatcagccactggtacaat 398
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 ttctggctcagtgttcgagggaacagggttgcttgctttatcatcagccactggtacaat 689

                                                                       
Query: 399 ggacacaatacaagcaacttttccagactgagttagattgctttgtttctgtgcacacaa 458
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 688 ggacacaatacaagcaacttttccagactgagttagattgctttgtttctgtgaacacaa 629

                                                                       
Query: 459 atttatggtaatacatcacttttgatgctgcatcatttttcctattaaaatttataatga 518
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 atttatggtaatacatcacttttgatgctgcatcatttttcctattaaaatttataatga 569

                                                                       
Query: 519 aaacccttcctttgatgtattttcagagatatacctctagagatgtttattttaatagtg 578
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 aaacccttcctttgatgtattttcagagatatacctctagagatgtttattttaatagtg 509

                     
Query: 579 agcaatttaa 588
           ||||||||||
Sbjct: 508 agcaatttaa 499


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 988
Length adjustment: 10
Effective length of query: 578
Effective length of database: 978
Effective search space:   565284
Effective search space used:   565284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)