BAC Information

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BAC

Clone NameMSMg01-154C24
Chromosome14 (Build37)
Map Location 68,389,962 - 68,496,674
singlet/doubletdoublet
Overlap geneDock5
Upstream geneENSMUSG00000057913, LOC668366, Dpysl2, EG432870, Pnma2, LOC672614, Bnip3l, Ppp2r2a, Ebf2, EG628416, LOC100043046, LOC100043056, Cdca2, Kctd9, Gnrh1
Downstream geneNefl, Nefm, LOC100043072, Adam7, Adamdec1, Adam28, LOC641033, LOC100043082
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-154C24.T7 (MSMg01no154_c24.b1)MSMg01-154C24.TJ (MSMg01no154_c24.g1)
ACCAG355554AG355555
length685685
length of high quality
(start - end)		643 (43 - 685)542 (74 - 615)
definitionCHROMAT_FILE: MSMg01no154_c24.b1 PHD_FILE: MSMg01no154_c24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:18:45 2005CHROMAT_FILE: MSMg01no154_c24.g1 PHD_FILE: MSMg01no154_c24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:18:45 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,389,962 - 68,390,600)(68,496,133 - 68,496,674)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCTCAGGACACCCACTGTGGCCAGACACCTGGCAAATATCCTTGCCACA
TCAAGGAAGTGTCAGGAAAGTATAAGGAAATAGACAGCCAGCAGTGCTTT
TAAATGATCTCTTTTAGATATGCTTGTCTCTGAAACAGCCAGACTCCAGA
ACCCAGGGAAACACAATTGCTATCTTTAGGTGCTACTATTGATGGGGTGA
GTCCCTTCACGGGGACTAAGTGCTCTGAATTTATCTTTCAAGCTAACGGC
AAACTTTTATGACAGAGGAAAACTTGGAGGCCAAGAGAAGTGAAAATTTC
TTAATTCCACAACTGGGGAGTGAAGTCAGACTCCAAAACCAGCACTGGGT
GAGGGGTCTTGCTGGGATGGGACAGATGAAAAGTCCTAGGAAGGGCCTCT
CCTGGCACCCTTACCAGTGTAGACATAGTCTGTCCCCTGTGCCTACAGGT
TCTGCACCCCAAGAGTTGACCGCGAGGATTTTCTTCTATACTGACTCGAT
ACAGACTTTCCTCTCCTGTGCCCTTTTCTCCTAAATGATACACTGTGATA
ATACTTACAGGACATTATATCCGGACAACATATCCGGGTATCAGCCAGGA
GAGGCTGCAGAACTGGCTCAGTTGGTAAAGGGCTG

CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCTTGTAGTTGTTGCCATGGAGTGTTT
GAATGTCAGTGGTAGAATGCTGGCCACTCAGAGAAGGATGTCACCCACTG
TGTTTTCAAAGTGTCTTGGCATGAGTGAGGAGACAGAACACATACAGAGT
TCATGACCTCCAACTCGCATGTCAATTGCACACGGATTTTGACATCGGAT
TATATTCCTTCCAGTAGTGTTTCTTTTATGGGATTCATTTTTTTAAATAG
TGCCTGGCATGCCCGACACTCAAGGGGAGGCTCTTGTATCTGCTTAGTAC
TTCGAGTTCTTGGCTTGAGTCTTGAATTCCTTTATTACTTTTAGGTGGTT
GAGGACTGGGGGCAGGAGTGCTTTGCAAACAGAAGACCTGCAGGAAATGC
CGAGTAATGACTTGTGTTGGTTCACCCTCCCTGCTCCCGTCTTCTTTTAA
AACAAATAAACAGAATGGAAACGCCCACATTACTTACTGCCAGAGAGAAT
GCCTAGGCAAGGCTGGCACCATTTCTTGGCCTCTGGGGGTTTATGTCTTG
CAGCTTCCTGTTGGTGATTTGGGGACTCTCCCTTTGCACCTTCGGCCCCC
CCCACCTCTGAGAAAGCATACCTGATCTATGTGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no154_c24.b1 MSMg01no154_c24.b1 CHROMAT_FILE:
MSMg01no154_c24.b1 PHD_FILE: MSMg01no154_c24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:18:45 2005
         (643 letters)



>mm_chr14_68389759_68390801
          Length = 1043

 Score = 1205 bits (623), Expect = 0.0
 Identities = 635/639 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcctcaggacacccactgtggccagacacctggcaaatatccttgccacatcaag 63
           ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcctcaggacaccccctatggccagacacctggcaaatatccttgccacatcaag 263

                                                                       
Query: 64  gaagtgtcaggaaagtataaggaaatagacagccagcagtgcttttaaatgatctctttt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gaagtgtcaggaaagtataaggaaatagacagccagcagtgcttttaaatgatctctttt 323

                                                                       
Query: 124 agatatgcttgtctctgaaacagccagactccagaacccagggaaacacaattgctatct 183
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 324 agatatgcttgtctctgaaacagccagactccagaacccagggaaaaacaattgctatct 383

                                                                       
Query: 184 ttaggtgctactattgatggggtgagtcccttcacggggactaagtgctctgaatttatc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttaggtgctactattgatggggtgagtcccttcacggggactaagtgctctgaatttatc 443

                                                                       
Query: 244 tttcaagctaacggcaaacttttatgacagaggaaaacttggaggccaagagaagtgaaa 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tttcaagctaacggcaaacttttatgacagaggaaaacttggaggccaagagaagtgaaa 503

                                                                       
Query: 304 atttcttaattccacaactggggagtgaagtcagactccaaaaccagcactgggtgaggg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 atttcttaattccacaactggggagtgaagtcagactccaaaaccagcactgggtgaggg 563

                                                                       
Query: 364 gtcttgctgggatgggacagatgaaaagtcctaggaagggcctctcctggcacccttacc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gtcttgctgggatgggacagatgaaaagtcctaggaagggcctctcctggcacccttacc 623

                                                                       
Query: 424 agtgtagacatagtctgtcccctgtgcctacaggttctgcaccccaagagttgaccgcga 483
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 agtgcagacatagtctgtcccctgtgcctacaggttctgcaccccaagagttgaccgcga 683

                                                                       
Query: 484 ggattttcttctatactgactcgatacagactttcctctcctgtgcccttttctcctaaa 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ggattttcttctatactgactcgatacagactttcctctcctgtgcccttttctcctaaa 743

                                                                       
Query: 544 tgatacactgtgataatacttacaggacattatatccggacaacatatccgggtatcagc 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tgatacactgtgataatacttacaggacattatatccggacaacatatccgggtatcagc 803

                                                  
Query: 604 caggagaggctgcagaactggctcagttggtaaagggct 642
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 804 caggagaggctgcagaactggctcagttggtaaagggct 842


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1043
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1033
Effective search space:   653889
Effective search space used:   653889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no154_c24.g1 MSMg01no154_c24.g1 CHROMAT_FILE:
MSMg01no154_c24.g1 PHD_FILE: MSMg01no154_c24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:18:45 2005
         (542 letters)



>mm_chr14_68495933_68496874
          Length = 942

 Score = 1033 bits (534), Expect = 0.0
 Identities = 540/542 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcttgtagttgttgccatggagtgtttgaatgtcagtggtagaatgctggccactcagag 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 742 tcttgtagttgttgccatggagtgtttgaatgtcagtggtagaatgctgggcactcagag 683

                                                                       
Query: 61  aaggatgtcacccactgtgttttcaaagtgtcttggcatgagtgaggagacagaacacat 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 682 aaggatgtcacccactgtgttttcaaagtgtcctggcatgagtgaggagacagaacacat 623

                                                                       
Query: 121 acagagttcatgacctccaactcgcatgtcaattgcacacggattttgacatcggattat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 acagagttcatgacctccaactcgcatgtcaattgcacacggattttgacatcggattat 563

                                                                       
Query: 181 attccttccagtagtgtttcttttatgggattcatttttttaaatagtgcctggcatgcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 attccttccagtagtgtttcttttatgggattcatttttttaaatagtgcctggcatgcc 503

                                                                       
Query: 241 cgacactcaaggggaggctcttgtatctgcttagtacttcgagttcttggcttgagtctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 cgacactcaaggggaggctcttgtatctgcttagtacttcgagttcttggcttgagtctt 443

                                                                       
Query: 301 gaattcctttattacttttaggtggttgaggactgggggcaggagtgctttgcaaacaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 gaattcctttattacttttaggtggttgaggactgggggcaggagtgctttgcaaacaga 383

                                                                       
Query: 361 agacctgcaggaaatgccgagtaatgacttgtgttggttcaccctccctgctcccgtctt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 agacctgcaggaaatgccgagtaatgacttgtgttggttcaccctccctgctcccgtctt 323

                                                                       
Query: 421 cttttaaaacaaataaacagaatggaaacgcccacattacttactgccagagagaatgcc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 cttttaaaacaaataaacagaatggaaacgcccacattacttactgccagagagaatgcc 263

                                                                       
Query: 481 taggcaaggctggcaccatttcttggcctctgggggtttatgtcttgcagcttcctgttg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 taggcaaggctggcaccatttcttggcctctgggggtttatgtcttgcagcttcctgttg 203

             
Query: 541 gt 542
           ||
Sbjct: 202 gt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 942
Length adjustment: 10
Effective length of query: 532
Effective length of database: 932
Effective search space:   495824
Effective search space used:   495824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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