BAC Information

Click to search

BAC

Clone NameMSMg01-154N05
Chromosome14 (Build37)
Map Location 109,208,243 - 109,344,682
singlet/doubletdoublet
Overlap geneSlitrk1
Upstream geneLOC668757, EG668761
Downstream geneLOC640892
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-154N05.T7 (MSMg01no154_n05.b1)MSMg01-154N05.TJ (MSMg01no154_n05.g1)
ACCAG356009AG356010
length712710
length of high quality
(start - end)
578 (69 - 646)506 (70 - 575)
definitionCHROMAT_FILE: MSMg01no154_n05.b1 PHD_FILE: MSMg01no154_n05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:19:34 2005CHROMAT_FILE: MSMg01no154_n05.g1 PHD_FILE: MSMg01no154_n05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:19:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,208,243 - 109,208,820)(109,344,177 - 109,344,682)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATCCGCGGA
ATTCCAGCATTTGCTAATCTAATCTGCTCGACTGAGTCTAGGGAGTAATC
AACTGGACAACCAAGTGAAGGGTGACAACAACTGCCAGCTACCACTGTTT
TAAGTACAGTACATGTTCTCAAGAAAAGATCCTGCCAGCTCATTTTCTGG
GCAGACACTCCACAATCCATCCACTGCATCTCCATGATGAGTCTACTGAA
CAGTTGCCAATCCTGCAAATATTAGAGCAGCCCGATGTCTTCAGCAGAAG
TAGAATGATGTCCTGGACTTCCAATGTTTGGACGATCCAGGCTGCATTGA
ACATGCTCAAGAGTCTAGGCATTAGGGTGGTTGCTTCCAGAGAATGGGCA
CTAGGCTACAGACATATCTTGTAAATATCCTCATCTTGTCCTATTCACCA
AAACATCAGCCATATTCTTCTCACAGGCATCTTAAAGATGTCCTCAGGCA
GATGGAAGACTGAAGGCAGAGTGTTTGGCTCCATTAAATGCTCACACAGT
CTTTCCATCTTTCACCCAAGGCAAATAGTATTTCCACATTGAGAAATTGT
GTGGTGCTCTTATTGATAGAATCACACCATCAAGTTCTATGGGTAACAAA
CAGCTATGGTAGTAGCCCGTATTGTCCGGTGGGAATCTGGTACTCCCTGA
CAAACAACTTGT
CATGACAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTTTTCTGCAGAATTCCCACCAAACAAAGAAGCTTAGATAAAT
ATGAATATTGTTATCAATGCCAGTATTCCTAAATATCAGAAGGGATAATT
GTGTTTAGCACACCTATTCAATAGTCGAAAAACAATGACTCAGAAAAAAA
ATGAGTGCACTTTAATTGCATAGAATACTATGTGTGATGTCTCAAAACAC
TGAGGAAAGTAAGGTAGCCACAAAATTTAATTAGTGCTTTATATAATTTC
TGCTGAAACACTGTTAAAACTTAAAATGAATGTTGACATAAAGTAAGTCT
CCTGTTTCATTTTGGGTGGAGGGGCCTGGAAGTGAAAATTATCTACAACT
GTGTCCTGTTACAAAAGTCTATTCATAAACACCAATTTATTCTATTGTGC
AATACATCTTGTATTCTTTTATGAGTAATTCAAATGCATAAAAATATTAA
CTCTAAGAACATTTGCCTGGCATTGTCACAGACATAAATATCTAATATTT
ATTGTGTTCATTCTTGTTTAAGTCATCTGAATCCATAGTTCAGTGTCCGT
TTTACCACTCAGGAGGTCCCGAGCTTTAATGCCACTGCCTTTTGAAATTA
CCTATATTTCTCTGCAATATTTGTGCAAAGGAAACTTTTCTTTTACACTT
TAACTGCACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no154_n05.b1 MSMg01no154_n05.b1 CHROMAT_FILE:
MSMg01no154_n05.b1 PHD_FILE: MSMg01no154_n05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:19:34 2005
         (578 letters)



>mm_chr14_109208043_109209020
          Length = 978

 Score = 1087 bits (562), Expect = 0.0
 Identities = 574/578 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctaatctgctcgactgagtctagggagtaatcaactggacaaccaagtgaagggtgacaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 201 ctaatctgctcgactgagtctagggagtaatcaactggacaaccaagtgaagggtgacag 260

                                                                       
Query: 61  caactgccagctaccactgttttaagtacagtacatgttctcaagaaaagatcctgccag 120
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caactgccagctaccattgttttaagtacagtacatgttctcaagaaaagatcctgccag 320

                                                                       
Query: 121 ctcattttctgggcagacactccacaatccatccactgcatctccatgatgagtctactg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctcattttctgggcagacactccacaatccatccactgcatctccatgatgagtctactg 380

                                                                       
Query: 181 aacagttgccaatcctgcaaatattagagcagcccgatgtcttcagcagaagtagaatga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacagttgccaatcctgcaaatattagagcagcccgatgtcttcagcagaagtagaatga 440

                                                                       
Query: 241 tgtcctggacttccaatgtttggacgatccaggctgcattgaacatgctcaagagtctag 300
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct: 441 tgtcctggacttccaatgtttggacgatccaggctgcattgagcatgctcaagagtccag 500

                                                                       
Query: 301 gcattagggtggttgcttccagagaatgggcactaggctacagacatatcttgtaaatat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcattagggtggttgcttccagagaatgggcactaggctacagacatatcttgtaaatat 560

                                                                       
Query: 361 cctcatcttgtcctattcaccaaaacatcagccatattcttctcacaggcatcttaaaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cctcatcttgtcctattcaccaaaacatcagccatattcttctcacaggcatcttaaaga 620

                                                                       
Query: 421 tgtcctcaggcagatggaagactgaaggcagagtgtttggctccattaaatgctcacaca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgtcctcaggcagatggaagactgaaggcagagtgtttggctccattaaatgctcacaca 680

                                                                       
Query: 481 gtctttccatctttcacccaaggcaaatagtatttccacattgagaaattgtgtggtgct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtctttccatctttcacccaaggcaaatagtatttccacattgagaaattgtgtggtgct 740

                                                 
Query: 541 cttattgatagaatcacaccatcaagttctatgggtaa 578
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cttattgatagaatcacaccatcaagttctatgggtaa 778


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 978
Length adjustment: 10
Effective length of query: 568
Effective length of database: 968
Effective search space:   549824
Effective search space used:   549824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no154_n05.g1 MSMg01no154_n05.g1 CHROMAT_FILE:
MSMg01no154_n05.g1 PHD_FILE: MSMg01no154_n05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:19:34 2005
         (506 letters)



>mm_chr14_109343977_109344882
          Length = 906

 Score =  971 bits (502), Expect = 0.0
 Identities = 505/506 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attcccaccaaacaaagaagcttagataaatatgaatattgttatcaatgccagtattcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 attcccaccaaacaaagaagcttagataaatatgaatattgttatcaatgccagtattcc 647

                                                                       
Query: 61  taaatatcagaagggataattgtgtttagcacacctattcaatagtcgaaaaacaatgac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 taaatatcagaagggataattgtgtttagcacacctattcaatagtcgaaaaacaatgac 587

                                                                       
Query: 121 tcagaaaaaaaatgagtgcactttaattgcatagaatactatgtgtgatgtctcaaaaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 tcagaaaaaaaatgagtgcactttaattgcatagaatactatgtgtgatgtctcaaaaca 527

                                                                       
Query: 181 ctgaggaaagtaaggtagccacaaaatttaattagtgctttatataatttctgctgaaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 526 ctgaggaaagtaaggtagccacaaaatttaattagtgctttatataatttctgttgaaac 467

                                                                       
Query: 241 actgttaaaacttaaaatgaatgttgacataaagtaagtctcctgtttcattttgggtgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 actgttaaaacttaaaatgaatgttgacataaagtaagtctcctgtttcattttgggtgg 407

                                                                       
Query: 301 aggggcctggaagtgaaaattatctacaactgtgtcctgttacaaaagtctattcataaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 aggggcctggaagtgaaaattatctacaactgtgtcctgttacaaaagtctattcataaa 347

                                                                       
Query: 361 caccaatttattctattgtgcaatacatcttgtattcttttatgagtaattcaaatgcat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 caccaatttattctattgtgcaatacatcttgtattcttttatgagtaattcaaatgcat 287

                                                                       
Query: 421 aaaaatattaactctaagaacatttgcctggcattgtcacagacataaatatctaatatt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 aaaaatattaactctaagaacatttgcctggcattgtcacagacataaatatctaatatt 227

                                     
Query: 481 tattgtgttcattcttgtttaagtca 506
           ||||||||||||||||||||||||||
Sbjct: 226 tattgtgttcattcttgtttaagtca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 906
Length adjustment: 10
Effective length of query: 496
Effective length of database: 896
Effective search space:   444416
Effective search space used:   444416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)