BAC Information

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BAC

Clone NameMSMg01-154N23
Chromosome14 (Build37)
Map Location 124,335,641 - 124,335,883
singlet/doubletsinglet
Overlap geneItgbl1
Upstream geneTmtc4, Vgcnl1, LOC668700
Downstream geneFgf14, GA_x5J8B7W4W3R-189177-188236
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-154N23.T7 (MSMg01no154_n23.b1)MSMg01-154N23.TJ (MSMg01no154_n23.g1)
ACCAG356042AG356043
length731735
length of high quality
(start - end)
619 (38 - 656)243 (68 - 310)
definitionCHROMAT_FILE: MSMg01no154_n23.b1 PHD_FILE: MSMg01no154_n23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:19:37 2005CHROMAT_FILE: MSMg01no154_n23.g1 PHD_FILE: MSMg01no154_n23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:19:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTGCGGCCGCTATACGACTCCTATTTCGCAGAGAATCCGCGGAATTCTC
AACTGATTCCTATGGAATGGCTGAGAAGCACTTGAAAAAATGTTCAACAT
CCTTAATCATCAGGGCAATGCAAATCAAAACATCCTTGAGATTCTACCTC
ACACCAGTCAGAATGGCTAAGATAAAAAATTCAGGTGACAGCAGATGCTG
GCGAGGATGTGGAGAAATAAGAACACTCCTCCGTTGCTGGTGGAATTGCA
AGCTTGTACAAGCACTCTGGAAGTCATTCTGGAGGTTCCTCAGAAAATTG
GACATAATACTATCGGAAGATCCAGCAATACCTCTCCTGGGCATATACCC
AGAAGAAGTTCCAACTGGTAATAAGAACACATGCTCCACTATGTTCATAG
CAACCTTATTTATAATACCCAGGAGCTGGAAAGAACCCAGATGTCCCTCA
ACAGAATGGATACAGAAAATGTGGTACATTTACACAATGGAGTACTACTC
AGCTATTAAAACAATGAATTTATAAAATTCATGGACAAATGGATGCATAT
GGAGTATATCATCCTTAGTGAGGTAACCTAATCACAAAAGAAGTCATTAG
ATATGCACTCACTGATAAGTGGATATTAGCCCAGAAACATAGAACACCCA
AGATACAATTTGCAAAAACAAAGATTATCAAGAAGAGGAAATACCAATGG
GTGGATACTTCGTTCCTCATTAGAATAGGGA
ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGG
GTTATTTGATTTTCTGAAGTCCACCTTCTTGATTGATCTCACTCTTATCA
AATTGTTCCCTACCAGGAAGGATGATTTGTTTGCTCTGTGCAATGAAGTG
TCTGTTGCCCCAGAAAGAGTGAGAGTAAGAATGAGAGTGCTAGGGGAAGG
AGATTATATAGTGGTGTTTTTTGTTTTGTTAATTGCATGGCCTCTGATGG
GCAGGCATAGCCAAGTATCTTGTTTCTCATAAAATTGGAGTGTATGGGTT
GGGGAGCATGGTGCGCCAGGAGGCGGTTGTATAGTTCACTTTTCGTATAG
CATTCGATATGTACTTCCCTACTATAACATTTGATTTACCTTAACTAACC
TTTCTAGTGCTCAAATGATTTGTTTTTTTTTGACCTTCGCATTTTTACCC
CGATGCTTTTATTCTATCTTCCCTTTCTTTTCACAATATTTGCAGCTTTC
TACTTTTTCATTGTGCTTACCCCGTACCATTTCTTTTTCTCTTAAATTTA
TCGCCTCTATTTCTTTTCACTTTTCTAAACTTTCACCTCTTATTTTCCAC
CTTTTTCCGTTCTCACACCCTCTTTTTTTTTTTTTCCCACCACATTTTTC
CAACCCTCCTTTTCTCTCTTCCTCCTCTTACCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no154_n23.g1 MSMg01no154_n23.g1 CHROMAT_FILE:
MSMg01no154_n23.g1 PHD_FILE: MSMg01no154_n23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:19:37 2005
         (243 letters)



>mm_chr14_124335441_124336083
          Length = 643

 Score =  462 bits (239), Expect = e-135
 Identities = 242/243 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgttcagttctgagccccattttttaatggggttatttgattttctgaagtccacctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgttcagttctgagccccattttttaatggggttatttgattttctgaagtccacctt 260

                                                                       
Query: 61  cttgattgatctcactcttatcaaattgttccctaccaggaaggatgatttgtttgctct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttgattgatctcactcttatcaaattgttccctaccaggaaggatgatttgtttgctct 320

                                                                       
Query: 121 gtgcaatgaagtgtctgttgccccagaaagagtgagagtaagaatgagagtgctagggga 180
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcgcaatgaagtgtctgttgccccagaaagagtgagagtaagaatgagagtgctagggga 380

                                                                       
Query: 181 aggagattatatagtggtgttttttgttttgttaattgcatggcctctgatgggcaggca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggagattatatagtggtgttttttgttttgttaattgcatggcctctgatgggcaggca 440

              
Query: 241 tag 243
           |||
Sbjct: 441 tag 443


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)