BAC Information

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BAC

Clone NameMSMg01-154P07
Chromosome14 (Build37)
Map Location 65,938,165 - 65,938,408
singlet/doubletsinglet
Overlap geneFbxo16
Upstream geneMsra, Kif13b, Hmbox1, LOC100043657, D14Ertd231e, Extl3, Fzd3, LOC668286
Downstream geneZfp395, Pnoc, Elp3, Gm600, Scara5, Pbk, Esco2, Ccdc25, Scara3, Clu, Gulo, Adam2, LOC100043675, Ephx2, Chrna2, Ptk2b, LOC100043676, Trim35
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-154P07.T7 (MSMg01no154_p07.b1)MSMg01-154P07.TJ (MSMg01no154_p07.g1)
ACCAG356106AG356107
length691690
length of high quality
(start - end)
244 (68 - 311)291 (77 - 367)
definitionCHROMAT_FILE: MSMg01no154_p07.b1 PHD_FILE: MSMg01no154_p07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:19:44 2005CHROMAT_FILE: MSMg01no154_p07.g1 PHD_FILE: MSMg01no154_p07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:19:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GAATCAAAATTTGCGGCGCTAAACGATCACATTCAGAGCGGACCGCGGAA
TTCAGGTATTCAAAAGTGTGGGGAAAGACCATGCCACACAGTGTAACCTT
GCGGGACAGTTAGCCAATGGTAGAGAAAGTGACAGCAATCCCTGGTCCTG
AATCCATGAAAATGAAGAGATTTCCAAGATTCTGAGGAAGCCTGCACACA
CGAGTCAGAGCGTAAAATGGATTAATGATTTCACGTCATCTGCACCTTGC
CTGACAAGATGGAGTAGGGGGTCGGGGGAGCACGGGGACGGGGTGGGGTG
GGGTGGCATGTTTGTTTTTGATAGACGTTAAGGGTCTGTGTCCATGAGAA
TCATCTTTTATCGCTATGCAACTGAAGCCAAGGGAAAGGCATACTATTGA
CTTTCTGCTCTCTGTGCTTGTTTGGTATGTTCTAAGGCCTATTCCGCCCT
TGTATCTTTCTTTATTCCCCCCTTCCTCTTTATTTATACCCCTGTTATGC
TTTATGTCTATGCCCCTATTATGTTCTCACGGGCTTACTTTTTTCCCCCC
TTCCTGCTCCTTTTTTCTGTATAGTTCCTGGAATCTTATTTGTTCATCTC
TCTGTTCTCTATTTCTCAAACCCCTGTTTACTCCTTTTTTCACCCACAAT
CTCCGTCTACTTTTTTTTTTTCTTTTTCCACTCTTTTCCTC
TAACGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGGAGGAGAACTGAGCCAGTCTCT
GCAAGCCAACCCGCTGCTGGGTGCTGATGAGCGAGAAATCCACACTGAGA
CCAGAAGGACCTCCCCGCTGATCCCAGCCTGAATCCCCAGCCCGCAGAAT
CATGAGACAAGGGTTCTGTTCTCTGCCTTTGGCATTAAATGCAGCCCATA
ACTGAGCCCTTAAAGACTGTAGAAAAGAAACATCTACATAAGACTGTTCA
ATTGATTGCTGTTTTATATCATACAGCTTTTATAATACTCATTTTTATTA
TTACAATATTTTATATATTTTAAAGAATATGATAATAAAAGACCTTTGAT
ATCATCGTTTGAGGGGTTTTTTTGTCTTGTTTTACTTTATTTTTTTTCCA
AAAACAGTGACTATTGGAAGTCTAGATTCAACATGGCAGATTCATATCCG
AGGGTTACCCACAACCTTCTGTGTTTATTTTGAATCGCCTTTAGCCTATG
AATTATGTGATGGCTAAACTGATTGCCACTTTGTTGGGTTTTAGAATCCT
TATGAATATTTTCCTCTGTGTGTGTCTGTGCGCAATTTTCTTCACTACCC
CAATTGTAGCTTAAAGATTTTTCCGCACTCTGTTTCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no154_p07.b1 MSMg01no154_p07.b1 CHROMAT_FILE:
MSMg01no154_p07.b1 PHD_FILE: MSMg01no154_p07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:19:44 2005
         (244 letters)



>mm_chr14_65937965_65938609
          Length = 645

 Score =  426 bits (220), Expect = e-124
 Identities = 238/244 (97%), Gaps = 1/244 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtggggaaagaccatgccacacagtgtaaccttgcgggacagttagccaatggtagagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtggggaaagaccatgccacacagtgtaaccttgcgggacagttagccaatggtagagaa 260

                                                                       
Query: 61  agtgacagcaatccctggtc-ctgaatccatgaaaatgaagagatttccaagattctgag 119
           |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtgacagcaatccctggtttctgaatccatgaaaatgaagagatttccaagattctgag 320

                                                                       
Query: 120 gaagcctgcacacacgagtcagagcgtaaaatggattaatgatttcacgtcatctgcacc 179
           |||||||||| ||| |||||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 321 gaagcctgcaaacatgagtcagagcgtaagatggattagtgatttcacgtcatctgcacc 380

                                                                       
Query: 180 ttgcctgacaagatggagtagggggtcgggggagcacggggacggggtggggtggggtgg 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgcctgacaagatggagtagggggtcgggggagcacggggacggggtggggtggggtgg 440

               
Query: 240 catg 243
           ||||
Sbjct: 441 catg 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 645
Length adjustment: 9
Effective length of query: 235
Effective length of database: 636
Effective search space:   149460
Effective search space used:   149460
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)