BAC Information

Click to search

BAC

Clone NameMSMg01-155N14
Chromosome14 (Build37)
Map Location 51,575,190 - 51,575,699
singlet/doubletsinglet
Overlap geneLOC667034
Upstream geneOlfr724, LOC100041975, Olfr725, LOC100042882, Olfr726, Olfr727, Olfr728, Olfr729, Olfr730, Olfr731, Olfr732, Olfr733, Olfr734, Olfr735, Tlr11, Olfr736, Olfr737-ps1, Olfr738, Olfr739, Olfr740, Olfr741, GA_x5J8B7U07Q4-325-757, GA_x5J8B7TYL6J-3-280, Olfr742, Olfr743-ps1, Olfr744, Olfr745, Olfr746, Olfr747, Olfr748, Olfr749, Ttc5, Gm288, Rpph1, Parp2, Tep1, EG546611, Osgep, Apex1, Tmem55b, Pnp
Downstream geneLOC667210, Rnase10, Rnase9, Rnase11, Rnase12, Olfr750, GA_x5J8B7W5WBF-6267395-6266441, Rnase4, Ang1, Gm75, Rnase6, Rnase1, Ear5, Ear-ps1, Ang2, Ear14, Ear11, LOC100042187, EG633215, LOC100042203, LOC633238, EG638695, Vmn2r-ps110, LOC100042224, Vmn2r88, LOC100042247, V2r10, LOC100043041, EG434459, LOC100043031, LOC667289, EG545047, Ear-ps3, Ang4, Ear-ps4, AY358078, Hn1l-ps1, Ear-ps5, Ear6, Mett11d1, Slc39a2, Ndrg2, Gm77, Rnase13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-155N14.T7 (MSMg01no155_n14.b1)MSMg01-155N14.TJ (MSMg01no155_n14.g1)
ACCAG356748AG356749
length780733
length of high quality
(start - end)
369 (68 - 436)493 (76 - 568)
definitionCHROMAT_FILE: MSMg01no155_n14.b1 PHD_FILE: MSMg01no155_n14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:50 2005CHROMAT_FILE: MSMg01no155_n14.g1 PHD_FILE: MSMg01no155_n14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:50 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTCCTTTCGCGGATTCTGCGGTCCCCTATGAGCCCTGGTTCTAGA
CAATGGACATCCACGCTGGACTCTGGCAAGATGCGAAAAGCTAACTGTGG
AAACAGCGTTGAGCCCCACCACACCTCAGCCCCGCAGTCAGACCTGAGAA
GTCGAGACGTCATCTCCCAGGAGCCCCACAACTGTCCTTAGTAGGAAGAG
ACTTCCAAAGCCAAACCTGGAGGGACAGAAGTAGAAACCCACCTGGACCC
GGAACTGGAGGCGGCAGCTTTGTTTCTCACTCCTTCCTTCCTGTTGGGAT
GGCGAATAGAAGAATGAAATTTCCTTTGGAATCTCGTCCCCGATATGGGT
GAGGTCGGCGTTGCCTGGCCACGCAAACAGATTGGGGCGGGGTGCACAGG
AGTGGAGGGCGCCCCCCCCTCTCCCCCTCCCCGTTGTGACACCACCCTTT
AACTCCAAGTCCCCTTATTTTCTTCCCCTCCTCCCCGCCTCCCCCCCTCC
CCTCCCTTTCCCTCCCCCCCCCCCATTCCCCCTGTTTCTCCCTCCCCTCC
CCCTCTCCCCCCCTCATTACCCCCCTCGAGTCTCCCCCTTTTTCTCCCTC
ACCCCCCCTCCCCCCCCCCGCTCCCCTCCCTCATCTTTCCGCCCCTCTTT
TTTTTCTCTCTCGCCCCCTCTCCTCTTGTCTCTTTACACCCTCTCCCCCT
CCCCACCTTCTCTCTCTCCCGCGCTCCCCC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCATGACAGCCAGCCAGAGCTATACA
GAGAAACTCTGTCTTGAAAAAAAAAAAAAAGTTCTCAAAGTTAGCAGAAT
TTTTGGACTCCGTACTGTGTGTCCAATCAACTTGCCATCCTGTTTATGCC
TACTATCTAGAACTCATTTCCATCTGGGTCTCGAAGTGTTTCCCCAAAAT
CCTGCAGGCTCCTAGTCAGCACTGTTACCCACCCAGCAACCACTTCCCTA
ATCCCGAAAGCAGCTCAGATACTGTTTCGTTTCATTTTATTTCAAGATTG
CGCAATCTATGAAAAAATTGAATTTTTTCGCTTTTCAAATTCTTATCCAA
TAACGCAGCGGAGAATGGAGTTGCAGATAGGCAGTTCCGGGGCTCTCTAC
CCTGCTTCTCTTTCCACACAGGCCTCCTTTTCTAGCTGGGAAATCATGAC
TGTGTGCGGTGGATCACCTGCTGGTGGCCTTAGACTATGAGTGGATCTCT
TTGAAATGAACTCTAGAGAGGTTTCCTGCCACACCTCTGGATGAGGGTGT
GTCACCTTGTAGACAAGGCCTGCTGCCAATTGGTTGGAGCCTGGGGCTAT
GCATGAAAAGGCCAGGTTAGATAATAGTGTTCTAACATTTTTTGATCTGA
CTCAAACAGTGCCTCCATTGTAAACTTAAAGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no155_n14.g1 MSMg01no155_n14.g1 CHROMAT_FILE:
MSMg01no155_n14.g1 PHD_FILE: MSMg01no155_n14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:50 2005
         (493 letters)



>mm_chr14_51574992_51575884
          Length = 893

 Score =  839 bits (434), Expect = 0.0
 Identities = 482/510 (94%), Gaps = 21/510 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgacagccagccagagctatacagagaaactctgtcttgaaaaaaaaaaaaaa--gtt 58
           |||||||||||||||| |||||||||||||||||| ||| |||||||||||||||  |||
Sbjct: 199 catgacagccagccagggctatacagagaaactctatctcgaaaaaaaaaaaaaaaagtt 258

                                                                       
Query: 59  ctcaaagttagcagaatttttggactccgtactgtgtgtccaatcaacttgccatcctgt 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ctcaaagttagcagaatttttggactccgtactgtgtgtccaatcaacttgccatcctgt 318

                                                                       
Query: 119 ttatgcctactatctagaactcatttccatctgggtctcgaagtgtttccccaaaatcct 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ttatgcctactatctagaactcatttccatctgggtctcgaagtgtttccccaaaatcct 378

                                                                       
Query: 179 gcaggctcctagtcagcactgttacccacccagcaaccacttccctaatcccgaaagcag 238
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 379 gcaggctcctagtcagcactgttacccacccagcaaccgcttccctaatcccgaaagcag 438

                                                                       
Query: 239 ctcagatactgtttcgtttcattttatttcaagattgcgcaatctatgaaaaaattgaat 298
           |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 439 ctcagacactgtttcgtttcattttatttcaagattgcacaatctatgaaaaaattgaat 498

                                                                       
Query: 299 tttttcgcttttcaaattcttatccaataacgcagcggagaatggagttgcagataggca 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tttttcgcttttcaaattcttatccaataacgcagcggagaatggagttgcagataggca 558

                                                                       
Query: 359 gttccggggctctctaccctgcttctctttccacacaggcctccttttctagctgggaaa 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gttccggggctctctaccctgcttctctttccacacaggcctccttttctagctgggaaa 618

                                                                       
Query: 419 tcatgactgtgtgcgg---tgg----------------atcacctgctggtggccttaga 459
           ||||||||||||||||   |||                ||||||||||||||||||||||
Sbjct: 619 tcatgactgtgtgcgggggtggggtggggtggggggggatcacctgctggtggccttaga 678

                                         
Query: 460 ctatgagtggatctctttgaaatgaactct 489
           ||| ||||||||||||||||||||||||||
Sbjct: 679 ctaggagtggatctctttgaaatgaactct 708


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 893
Length adjustment: 10
Effective length of query: 483
Effective length of database: 883
Effective search space:   426489
Effective search space used:   426489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)