BAC Information

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BAC

Clone NameMSMg01-156D15
Chromosome14 (Build37)
Map Location 94,119,216 - 94,269,652
singlet/doubletdoublet
Overlap genePcdh9
Upstream geneLOC668566
Downstream geneLOC100043356, LOC100043783
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-156D15.T7 (MSMg01no156_d15.b1)MSMg01-156D15.TJ (MSMg01no156_d15.g1)
ACCAG357019AG357020
length743802
length of high quality
(start - end)
323 (46 - 368)212 (77 - 288)
definitionCHROMAT_FILE: MSMg01no156_d15.b1 PHD_FILE: MSMg01no156_d15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:18 2005CHROMAT_FILE: MSMg01no156_d15.g1 PHD_FILE: MSMg01no156_d15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:18 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,269,337 - 94,269,652)(94,119,216 - 94,119,427)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAGGGCTCTGCCTCTGCTGACAGTGAGAGAGATGACTATTGACAA
AGCTGCTATGATCATTCATCGCTCCTTCACCGTGTAGAGCAAACCAATAG
CTTTATCTTAATGACGTAATCTGCTTAATTTTGTTCCCATTCTAAACCTA
ATTGTTTCTGTTCCACCCAAATCACAAATGACAAATTACAAAATGAAAGG
ATAGGGCTAAGTGTACAGTTTAGTAGTAAGTGACTTATTGAGTATATACA
AGGCCTTACATTTTATCCCAACAGATCCAAATACAATTAAAAATATAAAA
TCTTAGCAAACAGTTTTTATATGCACCACCACCTAAAATATAATCAATTT
AAAATAGAAATGGAACTGCAATAGTTTTTCTTAATATACTACGTTTATCA
TGATTTACCTATCTTTAGACATGAAGATAAATTTAATATTTTAACAGATA
ATTTTAGTATATAGTATTGACATAAAAATATATAAAACATTATTAGTTTT
GACTGATTAGCTATAAGTACAGAGCCTAAGAGAACTAAATCAACTAAGGT
CCATTCATATTATAGGCAGCACAGTTCATCCAAAAACATAGAATGAAAAT
ACAGAATATTTAGAATTGTCAGCTGATTACTAAAGAAAAGCCATGTTTAC
AATTACAAAGAAATATGGCCATGAACATAAATTTCTCTATGAG
CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAAAGGATGGAGGGAGAGAAAGAG
GGTTGAATGTAGAAGGGAAAATAAAGAAAGAGGTACAGAGAGACACAGAC
AGAGGCAGAGGCCAACATACCCACAAACATACAGAGAGAAAGAGAGAGAG
AGAGATTGAGAGAGAGAGAAAGAGATTGAGAGAGAGAGAAAGAGATTGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTTTTCTGCCTGCCCTCATGCCCC
CCGACCCGCGNGATTTGGGTTGGTTCCCNAAGACGAGACCCCGGAATTGG
ATGTATAGAGAAAGTTGGAGTTTGTCCCCCCCAAAAAAAAAAAAAAAAAN
CAGGTGTCGGGCCGGGGCTCGCCCCATTATTCGCACACACCTAGATCCCA
TATCCCCTGGCCCTTCCTTATTTTTTATCCGGTTACCGCCCATACGCTAC
CCAAGCGATGTCATATAGCTCCCTTATTCTTACTTTCCCCTCGCATATGG
TTCGCTATACCCCCCGACTTGTTATATTCTTTGCAACGTACCTTTCAGTC
ATATTCTGCACGTCTAAAGAAATTGACTCCTTTTCCGGTGATGTCCCAAA
AATTTGGGGTCCCTCCAGGATTACCCCCCTTTCTATTTCCGTGCCTTCCT
TTGATCGCCTTTTGTACCCTTCCTCCTTCTCTTTCCCTCCTTTTTCCCCC
TC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no156_d15.b1 MSMg01no156_d15.b1 CHROMAT_FILE:
MSMg01no156_d15.b1 PHD_FILE: MSMg01no156_d15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:21:18 2005
         (323 letters)



>mm_chr14_94269133_94269855
          Length = 723

 Score =  596 bits (308), Expect = e-175
 Identities = 314/316 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccagggctctgcctctgctgacagtgagagagatgactattgacaaagctgctat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 gaattccagggctctgcctctgctgacagtgagagagatgactattgacaaagctgctat 461

                                                                       
Query: 65  gatcattcatcgctccttcaccgtgtagagcaaaccaatagctttatcttaatgacgtaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 gatcattcatcgctccttcaccgtgtagagcaaaccaatagctttatcttaatgacgtaa 401

                                                                       
Query: 125 tctgcttaattttgttcccattctaaacctaattgtttctgttccacccaaatcacaaat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 tctgcttaattttgttcccattctaaacctaattgtttctgttccacccaaatcacaaat 341

                                                                       
Query: 185 gacaaattacaaaatgaaaggatagggctaagtgtacagtttagtagtaagtgacttatt 244
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 340 gacaaattacaaaatgaaaggatagggctaagtgtacagtttagtagtaagtgatttatt 281

                                                                       
Query: 245 gagtatatacaaggccttacattttatcccaacagatccaaatacaattaaaaatataaa 304
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 gtgtatatacaaggccttacattttatcccaacagatccaaatacaattaaaaatataaa 221

                           
Query: 305 atcttagcaaacagtt 320
           ||||||||||||||||
Sbjct: 220 atcttagcaaacagtt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no156_d15.g1 MSMg01no156_d15.g1 CHROMAT_FILE:
MSMg01no156_d15.g1 PHD_FILE: MSMg01no156_d15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:21:18 2005
         (212 letters)



>mm_chr14_94119016_94119627
          Length = 612

 Score =  410 bits (212), Expect = e-119
 Identities = 212/212 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaaggatggagggagagaaagagggttgaatgtagaagggaaaataaagaaagaggtac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaaggatggagggagagaaagagggttgaatgtagaagggaaaataaagaaagaggtac 260

                                                                       
Query: 61  agagagacacagacagaggcagaggccaacatacccacaaacatacagagagaaagagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agagagacacagacagaggcagaggccaacatacccacaaacatacagagagaaagagag 320

                                                                       
Query: 121 agagagagattgagagagagagaaagagattgagagagagagaaagagattgagagagag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agagagagattgagagagagagaaagagattgagagagagagaaagagattgagagagag 380

                                           
Query: 181 agagagagagagagagagagagagagagagag 212
           ||||||||||||||||||||||||||||||||
Sbjct: 381 agagagagagagagagagagagagagagagag 412


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 92
Number of extensions: 21
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 1
Length of query: 212
Length of database: 612
Length adjustment: 9
Effective length of query: 203
Effective length of database: 603
Effective search space:   122409
Effective search space used:   122409
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)