BAC Information

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BAC

Clone NameMSMg01-156D16
Chromosome14 (Build37)
Map Location 18,093,649 - 18,093,971
singlet/doubletsinglet
Overlap genenone
Upstream geneNgly1, Top2b, Rarb, Tpi-rs9
Downstream geneThrb, LOC627608, Nr1d2, LOC632287
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-156D16.T7 (MSMg01no156_d16.b1)MSMg01-156D16.TJ (MSMg01no156_d16.g1)
ACCAG357021AG357022
length742830
length of high quality
(start - end)
318 (46 - 363)112 (77 - 188)
definitionCHROMAT_FILE: MSMg01no156_d16.b1 PHD_FILE: MSMg01no156_d16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:18 2005CHROMAT_FILE: MSMg01no156_d16.g1 PHD_FILE: MSMg01no156_d16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCAGGTCCCTCCACATGCTTCCTACCATGATAATAGATTAAATGT
CTGAAGGTATAAGCCCATCCCAGCTAAATGTTTACTTCATAAGGGTTGCT
GGGGTCATGGTGTCTCTGCCCAGCAGTGAAACCTTAACTAAGACATCTAA
TAAGATGAAATTTTTTTTCAATTATTATGTCCACTACTGTTATTAATAAG
CAAGCCATTATAGTACAAGTTCTTGCTTTCTTTTTTTATAAAATAACACA
AATGTGTCCTTCTAGGAATTTTCTATTTTTCTTATAAAAGATTTTTTTAT
ATTCCACTTATTTATTACGCTCTCNGNGACAATAACCTAGGAAAAATCAT
TTCATTTTCTTTGAGTTGCCCCCCCAAATTTTTACTTCAAGGTCGTTACT
AGGACATTTTGTCACATAGGTAAGGCATGTTATACAGGAGCAACTCTGGA
TGTCAAGTTACAGTAACCTGCTGGTGATTTAATTGACACTAGCACCTAGG
AGATACAGCTGAAGAAGGTGGCACTCAGTTTGTGAGAATCATTTTTCCCC
TGAGCAGCTGGAAGGAATACCAGCACTGTTGAGTGCAGACCTGTGGAATG
GGCATTTAGCTTGTGACATGTACCTCAGTCTGAATGTTTTCCTTCTACAT
GGTTTGTTTAAATACTCTTGATACGTCATCATACTCAATGCG
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCCATGTAAGCATCGCCAGCCTAT
AACTCACAGAGATCTGCCTACCTCTCCTTTGCTGAGATTAGAGGTGAGTG
CTGTTTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTNGNNNNNNNNN
TNNNTNNTTNNTNTNTNNTTNTTNTTTTCTTTTTNTTTTTCCCNTTTTTT
TNTTTTTTTTTNTTTTTTTTTTTTTTTTNNTTTTTTNNTCCTCCTTCCTC
CCCCCCCTCCCCTCCTTTTTTTTTTTTTTCCCCCTCCTCCCCCTTTTCCC
TCCCTCCTTCNCCTTTTTCCCCCNNCCCCNANCCCCNNNNNNNNNTNTNN
NTNNTNCNCNNTTTTCCCCCCCCCCCCCAAAAAAAAAAAACCTTCCCCCC
CGCCGGGGTTTCCCCTTCTCCCCTCCCTCCCCCCNCCCCTTTTCCCCTCC
CCTCCCCACCCCTCCCCCTTTTTCCTCTCCACCCCCCCCTCTTCTTCCCC
TCCTCCCCCTCCCTCCCCCCCTCCCCCCTCCCACTCCCCCCTCCCCCTTA
TCCCCCCACCTCCTCCCCCTCCCCCTTCCCTCCCCCCCTTCTCCCCCCCT
CTTTCCCTCCATCCCCTCTCTCCCCTCCTCCCTTCCTTCCCCCACTTCCC
TCCCCCCCCCCTCCTTCTCCCCTTTCTCCCCTTTTTTTCCCCCCCCCCCC
CCCCCCTTTTCCTCCCTCTATTCCATTTTTCCCCCCCCTCCCCTCTTCCC
CCCCCTTTTTTCTTCCTCCCCCTTTCCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no156_d16.b1 MSMg01no156_d16.b1 CHROMAT_FILE:
MSMg01no156_d16.b1 PHD_FILE: MSMg01no156_d16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:21:18 2005
         (318 letters)



>mm_chr14_18093453_18094171
          Length = 719

 Score =  574 bits (297), Expect = e-168
 Identities = 313/323 (96%), Gaps = 9/323 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcaggtccctccacatgct--------tcctaccatgataatagattaaatgtc 56
           |||||||||||||||||||||||||        |||||||||||||||||||||||||||
Sbjct: 197 gaattctcaggtccctccacatgctgctgtgcttcctaccatgataatagattaaatgtc 256

                                                                       
Query: 57  tgaaggtataagcccatcccagctaaatgtttacttcataagggttgctggggtcatggt 116
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 tgaaggtataagcccatcccagctaaatgtttacttcataagggttgctggggtcatggt 316

                                                                       
Query: 117 gtctctgcccagcagtgaaaccttaactaagacatctaataagatgaaatttttttt-ca 175
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 317 gtctctgcccagcagtgaaaccttaactaagacatctaataagatgaaatttttttttca 376

                                                                       
Query: 176 attattatgtccactactgttattaataagcaagccattatagtacaagttcttgctttc 235
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 attattatgtccactactgttattaataagcaagccattatagtacaagttcttgctttc 436

                                                                       
Query: 236 tttttttataaaataacacaaatgtgtccttctaggaattttctatttttcttataaaag 295
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 437 tttttttataaaataacacaaatgtgtccttctaggaattttccatttttcttataaaag 496

                                  
Query: 296 atttttttatattccacttattt 318
           |||||||||||||||||||||||
Sbjct: 497 atttttttatattccacttattt 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 719
Length adjustment: 9
Effective length of query: 309
Effective length of database: 710
Effective search space:   219390
Effective search space used:   219390
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)