BAC Information

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BAC

Clone NameMSMg01-156F19
Chromosome14 (Build37)
Map Location 18,354,633 - 18,354,916
singlet/doubletsinglet
Overlap genenone
Upstream geneRarb, Tpi-rs9
Downstream geneThrb, LOC627608, Nr1d2, LOC632287, Rpl15, Nkiras1, Ube2e1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-156F19.T7 (MSMg01no156_f19.b1)MSMg01-156F19.TJ (MSMg01no156_f19.g1)
ACCAG357123AG357124
length712713
length of high quality
(start - end)
315 (45 - 359)285 (75 - 359)
definitionCHROMAT_FILE: MSMg01no156_f19.b1 PHD_FILE: MSMg01no156_f19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:28 2005CHROMAT_FILE: MSMg01no156_f19.g1 PHD_FILE: MSMg01no156_f19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTGATCTTTCCAAGACTTTTATCATGAATGAGTGTTGGATTTTGTC
AAATGGTTTCTCTGCATCTAAAGAGAGGATAATGTGGATTTTGTCTTTGA
GTTTGTTTTTATAGTGGATTACTTTGATGGATTTCCATATATTAAACCAT
CGCTGCATCCCTGAAATGAAGCCTACTTGGTCATGATGGATGATCCTTTT
GATGTGTTCTTGGATTCAGTTTGCAAGGATTTTATTGAGTATTTTTACAT
TGATATTCATAAGGGAAATTAGTCTGAAGTTATCTTTCTTTGTTGGGTTT
TTTTGTGTTTTATTTATCACACCCCCCCCGGCTTCATAGAATGAATTGGG
TAGGTTACCTTCTGCCCCCCCTTTATAAACTACCTTGAGAAGTGTTTGAC
CTATGTCTTCTTCGACGGTACGATAGAACTCTGCTTACCCCATCTGGCCC
CTGCCTTCTTTTGCTTGTTAGACTATTGATGACTTCTTCCATCTCTTACT
CGCACATGCTATCGTTCACGCTCTCTTCCCGCTTATCCGCCTTTCCCTTT
CCTTCCTCCTTCCCCTTTCAGCCCCCTCTTTTCCCCCCGTTCTCCCCCTT
CTTTTTTTTTCCCCCCCTTTTTCCCCCGCTTTTCCTTCTCCCGTCACCCC
TCGCCTTTTCTG
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAAATTCTAGTCAGACAATGCTGTTAC
AACAGCACATGATTGGCAGCTTATAAGGATTACCATGCAGAGAAAGTAGC
CTGTGGGGGGCAGGGGAGGCAGTAGGTTTTCCTGTGAAGGTGACATGAAT
GTAAGAATTTCATCAAGGGCCAGTTGGAGAACATTTCAGGCAAACTTAAA
TTTCCTATCAGAAAACAGGAAAGCAAATAAGCCTCTCATAGGAAATCCAT
CATGGTTTGTTTTTGTGAGTTTTTTTGTGTGAGGTGGGTGCAAGTATGAG
AGATGGTGGATATTTTTTTCCCCCACCCCCCCCACAATTGGACTCTGGGC
TGATAGCAAGGCTTTTGCCACACCAAAAAAACACAGAGCATTGGGGAGAA
CAGGCTGGCTGGGTATGCAGGTATAGTAAAGAAAGCAGGGTGGAGATGGC
TGCAGTGGCTGATGATAGCCAGGTATAGTAGTAGTCACTGTAGGGATAGG
CATCTCAGAATAGAATCCAAAGAGAAGGGAATCCTTCCCAATATATATAG
TCAGCGCTTTGTCATTATTTCCCCCATGATCTTGAAGACTGCGCAAGCCT
TTGCATATTCATAGAAACATGGACATGNCTTTGTTGTTACAGTGTCCCAT
TTTGTTCACCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no156_f19.g1 MSMg01no156_f19.g1 CHROMAT_FILE:
MSMg01no156_f19.g1 PHD_FILE: MSMg01no156_f19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:21:28 2005
         (285 letters)



>mm_chr14_18354433_18355116
          Length = 684

 Score =  489 bits (253), Expect = e-143
 Identities = 277/289 (95%), Gaps = 9/289 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaattctagtcagacaatgctgttacaacagcacatgattggcagcttataaggattacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 aaattctagtcagacaatgctgttacaacagcacatgattggcagcttataaggattacc 425

                                                                       
Query: 61  atgcagagaaagtagcctgtg----gggggcaggggaggcagtaggttttcctgtgaagg 116
           ||||||||||||||||||| |    ||||||||||| |||||||||||||||||||||||
Sbjct: 424 atgcagagaaagtagcctggggggagggggcaggggtggcagtaggttttcctgtgaagg 365

                                                                       
Query: 117 tgacatgaatgtaagaatttcatcaagggccagttggagaacatttcaggcaaacttaaa 176
           ||||||||||||||||||||||||||||||||    |||||||||||||||||||||| |
Sbjct: 364 tgacatgaatgtaagaatttcatcaagggcca----gagaacatttcaggcaaacttaca 309

                                                                       
Query: 177 tttcctatcagaaaacaggaaagcaaataagcctctcataggaaatccatcatggtttgt 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 tttcctatcagaaaacaggaaagcaaataagcctctcataggaaatccatcatggtttgt 249

                                                            
Query: 237 ttttgtgagtttttttgtgtgaggtgggtgcaagtatgagagatggtgg 285
           ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ttttgtgag-ttttttgtgtgaggtgggtgcaagtatgagagatggtgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 684
Length adjustment: 9
Effective length of query: 276
Effective length of database: 675
Effective search space:   186300
Effective search space used:   186300
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)