BAC Information

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BAC

Clone NameMSMg01-157C14
Chromosome14 (Build37)
Map Location 57,599,187 - 57,724,138
singlet/doubletdoublet
Overlap geneLOC100042817, B020004C17Rik, Gja3, Gjb2
Upstream geneLOC100042759, EG545056, Mcpt1, Mcpt9, Mcpt2, Mcpt4, Mcpt8, Ctsg, Gzme, Gzmd, Gzmg, LOC672095, Gzmn, LOC100042770, LOC668072, LOC668074, Gzmf, Gzmc, LOC219102, Gzmb, LOC668082, Atp12a, Rnf17, Cenpj, Parp4, LOC100042788, 4930548G07Rik, Pspc1, LOC100043499, 9830124H08Rik, LOC100042797, LOC219106, LOC668118, Zmym2
Downstream geneLOC100043515, Gjb6, LOC668140, Cryl1, LOC668090, AU040096, Ift88, Il17d, N6amt2, Xpo4, Lats2, Sap18, F630043A04Rik, Mrp63, Zdhhc20, Efha1, LOC668160, Fgf9, LOC100043554
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-157C14.T7 (MSMg01no157_c14.b1)MSMg01-157C14.TJ (MSMg01no157_c14.g1)
ACCAG357716AG357717
length762742
length of high quality
(start - end)
321 (32 - 352)370 (373 - 742)
definitionCHROMAT_FILE: MSMg01no157_c14.b1 PHD_FILE: MSMg01no157_c14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:27 2005CHROMAT_FILE: MSMg01no157_c14.g1 PHD_FILE: MSMg01no157_c14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:27 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,723,824 - 57,724,138)(57,599,187 - 57,599,556)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTAGATGCCT
CAGCTCACTGCGCTACGGGAGAGGAGTCTCCTGTGCGCTACTGGAAGCTG
CAGGCCAACACAAAACTGTACCGTCCGTTTATCTAACACACACACACACA
CACACACACACACACACACACACACACAAGTATATATAATATTACTACAG
CGAAGCTTCGAATATAACAGCACACTTTCCACTAGTGAGTGTAGTAAGAG
CAACATCAACTCTCTTTCAACATCACCCAATCCCCCAAAAGCGAGTAGCT
GGGACTTGGAGCTTTGCGACCTGCGTCCTGGGTGAAGACACAGGTCTACC
TTTTTTGTCCCCCCCGCCCTCGGGACAGGACACTGGAAGAGCCTTGAGCT
CAAAGAGAGCTGGAAAAGAAGTGGGGCGGAGTGGGGTGGTTATTANNATT
TCACTATTCCTTCTCCCTATCTTTACCCCCCACTCCCACCTTATTTCCCC
CCCCCCCCCTCCTTTTACCTTTTTTTTCCCCTCTTTCTTTTCCCACATCC
CCCCACCCTCTTTTCCCCCTATTTTCCCCCCCCCACACATTATTTTCTTT
ATCCATTCCTTATTTTATCTCCCTTCCTCCTACATTGTCTTTTTACCCCC
CTCCCCTTACTTTATATACTCTACACTCCCCCCTTTAACCAACCCAGCTC
ACCACCCCCTCCTTTTACCCTCCCCCTCTGCAACCATAACTTTCCTCTTT
TCCTTCCCCCTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXATGAATGGGATCTTTCGTAAGACTTGATAATTATCGAC
TTTTAAAATATTGCCCCTGCCCCCAACTGCCTCCTTCCCTTCTAGCATGT
TGATTTGTTGTTTATTTTGTTTTGTTTTATTTTTGTTTTACAAGATGGGG
TTTCTCTGTGTACTCCTGGCTGTCTTGGAATTCTCTCTGTAGACCAGGCT
GGCCTCAAACTCACAGAGATCCGCCTGCTCCTTACTCCTGAGTGCTGGCA
TTAAAGACGTGTGCTATCACCTGGCTAGCATGTTGATTTAACAGGAAACT
TTCGTTCCTTGACCCCCCCCCTCATGCTGCTAGAGTAGAAGAGACTCCTG
GCCAAAAGAATCAAATCTCTAAACTGGGTGGAGGCTTAACATTCTAGTTG
AATAGTTCATTTACTTAGCCAAAGGACCACCCTTAGGAAGGCTGGCTTAC
CTTAGGCCAAGCTAAGAGATAGGAAGAATTATTAAGCCTTTACTAAGAAA
TGTACTATTGCCTTCACAGAATCTCCACCCTTATGGAAATACATGCAGGC
TACAGACATCCATATGGCATGAAAGTATGTTGGCTTTAATTTTTCCCTTT
TCTCCTTTCCTTTTCTTTTTGAGAGAGGGTTTCCTTATGTAGCCTTGGCT
ATCATGGATCTCTCACAGTAGGCCAGGTGAGCCACCACTGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no157_c14.b1 MSMg01no157_c14.b1 CHROMAT_FILE:
MSMg01no157_c14.b1 PHD_FILE: MSMg01no157_c14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:27 2005
         (321 letters)



>mm_chr14_57723477_57724197
          Length = 721

 Score =  586 bits (303), Expect = e-172
 Identities = 312/315 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctagatgcctcagctcactgcgctacgggagaggagtctcctgtgcgctactgga 64
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 662 gaattctagatgcctcagctcactgcactacgggagaggagtctcctgtgcgctactgga 603

                                                                       
Query: 65  agctgcaggccaacacaaaactgtaccgtccgtttatctaacacacacacacacacacac 124
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 602 agctgcaggccaacacaaaactgtaccgtccgtttatctaacacgcacacacacacacac 543

                                                                       
Query: 125 acacacacacacacacacacacaagtatatataatattactacagcgaagcttcgaatat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 acacacacacacacacacacacaagtatatataatattactacagcgaagcttcgaatat 483

                                                                       
Query: 185 aacagcacactttccactagtgagtgtagtaagagcaacatcaactctctttcaacatca 244
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 482 aacagcacactttccactagtgagagtagtaagagcaacatcaactctctttcaacatca 423

                                                                       
Query: 245 cccaatcccccaaaagcgagtagctgggacttggagctttgcgacctgcgtcctgggtga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 cccaatcccccaaaagcgagtagctgggacttggagctttgcgacctgcgtcctgggtga 363

                          
Query: 305 agacacaggtctacc 319
           |||||||||||||||
Sbjct: 362 agacacaggtctacc 348


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no157_c14.g1 MSMg01no157_c14.g1 CHROMAT_FILE:
MSMg01no157_c14.g1 PHD_FILE: MSMg01no157_c14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:27 2005
         (370 letters)



>mm_chr14_57598987_57599756
          Length = 770

 Score =  685 bits (354), Expect = 0.0
 Identities = 366/370 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgctgctagagtagaagagactcctggccaaaagaatcaaatctctaaactgggtgga 60
           |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 201 catgctgctagagtagaagagactcctggccaaaagaatcaaatctctagcctgggtgga 260

                                                                       
Query: 61  ggcttaacattctagttgaatagttcatttacttagccaaaggaccacccttaggaaggc 120
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggcttaacattctagatgaatagttcatttacttagccaaaggaccacccttaggaaggc 320

                                                                       
Query: 121 tggcttaccttaggccaagctaagagataggaagaattattaagcctttactaagaaatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggcttaccttaggccaagctaagagataggaagaattattaagcctttactaagaaatg 380

                                                                       
Query: 181 tactattgccttcacagaatctccacccttatggaaatacatgcaggctacagacatcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tactattgccttcacagaatctccacccttatggaaatacatgcaggctacagacatcca 440

                                                                       
Query: 241 tatggcatgaaagtatgttggctttaatttttcccttttctcctttccttttctttttga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatggcatgaaagtatgttggctttaatttttcccttttctcctttccttttctttttga 500

                                                                       
Query: 301 gagagggtttccttatgtagccttggctatcatggatctctcacagtaggccaggtgagc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 501 gagagggtttccttatgtagccttggctatcatggatctctcacagtaggccaggtgggc 560

                     
Query: 361 caccactgac 370
           ||||||||||
Sbjct: 561 caccactgac 570


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 770
Length adjustment: 9
Effective length of query: 361
Effective length of database: 761
Effective search space:   274721
Effective search space used:   274721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)