Query= MSMg01no158_o23.b1 MSMg01no158_o23.b1 CHROMAT_FILE:
MSMg01no158_o23.b1 PHD_FILE: MSMg01no158_o23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:33 2005
(652 letters)
>mm_chr14_76843643_76844697
Length = 1055
Score = 909 bits (470), Expect = 0.0
Identities = 556/602 (92%), Gaps = 35/602 (5%)
Strand = Plus / Minus
Query: 5 gaattccacacatttattctttatgaatggtgtggaattagaaatggtacactgtttcta 64
|||||||||||||||||| ||||||| | |||||||||||||||||||||||||||||||
Sbjct: 577 gaattccacacatttattatttatgagtagtgtggaattagaaatggtacactgtttcta 518
Query: 65 tatagcaatcaattgtacgtataggggtgataaactggttcacaaagcagagaggagcaa 124
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 tatagcaatcaattgtatgtataggggtgataaactggttcacaaagcagagaggagcaa 458
Query: 125 atcctgggtcaagttcttctcaga---actctctcaccaaaggctgagctgacagtggat 181
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 457 atcctgggtcaagttcttctcagaactactctctcaccaaaggctgagctgacagtggat 398
Query: 182 ttgtatcagcaactgtgccgttttaccctaagaactagaacaacaaatttaaaatccctc 241
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 397 ttgtatcagcaactgtgccgttttaccctaagaactagaacaacaattttaaaatccctc 338
Query: 242 taaggaaaagcagtatgttgacaagctgaagtccttctccaaacagttcaaatgtgatgt 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 taaggaaaagcagtatgttgacaagctgaagtccttctccaaacagttcaaatgtgatgt 278
Query: 302 aattcacggtgttttccgttacctctcagaagtcaatgacacttgtgaccttaagaaaac 361
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 aattcacagtgttttctgttacctctcagaagtcaatgacacttgtgaccttaagaaaac 218
Query: 362 aattctaagccagccccc------gccccgcatgcatctaatcctagcacttggggaggt 415
||||||||||||| | | ||||||| ||||||||||||||||||||||||
Sbjct: 217 aattctaagccag---acgtggggg---cgcatgcctctaatcctagcacttggggaggt 164
Query: 416 agaggcaggtgaatttctgagttcaaggctagccagagtgagttctaggacagccagggc 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163 agaggcaggtgaatttctgagttcaaggctagccagagtgagttctaggacagccagggc 104
Query: 476 tacacagtgaaaccctgccttg-aaaaaaccaaaaaagaaagaaaagaaagaaaaaagaa 534
||||||||||||||||| |||| ||||||||||| ||||||||| ||||||
Sbjct: 103 tacacagtgaaaccctgtcttgaaaaaaaccaaa----aaagaaaag-------aaagaa 55
Query: 535 agaaagaaagaaagaanaagttaacaattctaacctgttttctaccagtcaagactgatt 594
|||||||| ||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct: 54 agaaagaa--aaaga------taacaattttaacctgttttctaccagtcaagactgatt 3
Query: 595 tc 596
||
Sbjct: 2 tc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1055
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1045
Effective search space: 670890
Effective search space used: 670890
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no158_o23.g1 MSMg01no158_o23.g1 CHROMAT_FILE:
MSMg01no158_o23.g1 PHD_FILE: MSMg01no158_o23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:33 2005
(293 letters)
>mm_chr14_76736045_76736737
Length = 693
Score = 516 bits (267), Expect = e-151
Identities = 284/291 (97%), Gaps = 4/291 (1%)
Strand = Plus / Plus
Query: 1 acttgacttttcccagggtttgcagccctgtgtggttgccaggcatctgggaaagccatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acttgacttttcccagggtttgcagccctgtgtggttgccaggcatctgggaaagccatc 260
Query: 61 agatccactggggaagctactttgcaaaagaaaatacagtaaaaggtagtgggcgggggc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agatccactggggaagctactttgcaaaagaaaatacagtaaaaggtagtgggcgggggc 320
Query: 121 agggttctgaccagcctgcacccttccctttgctggtacagtgatctgatttgagatcaa 180
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agggtgctgaccagcctgcacccttccctttgctggtacagtgatctgatttgagatcaa 380
Query: 181 gtaacctggtatagtgagatacagtggaca--acagggccatcatgtaaggctggcgggt 238
||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 381 gtaaccttgaatagtgagatacagtggacagaacagggccatcatgtaaggctggcgggt 440
Query: 239 gtgggggacacacagcacaatttcagaagttccatggttacaccagcaccc 289
|||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgggggacaca--gcacaatttcagaagttccatggttacaccagcaccc 489
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space: 194256
Effective search space used: 194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
