BAC Information

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BAC

Clone NameMSMg01-159B12
Chromosome14 (Build37)
Map Location 73,279,367 - 73,437,529
singlet/doubletdoublet
Overlap geneLOC100043723, LOC668487, LOC668489, Cysltr2
Upstream geneLOC668482, LOC675957, Fndc3a, LOC100043721
Downstream geneLOC100043149, Rcbtb2, Rb1, P2ry5, Itm2b, LOC100043152, Med4, Nudt15, Sucla2, LOC100043734, EG629578
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-159B12.T7 (MSMg01no159_b12.b1)MSMg01-159B12.TJ (MSMg01no159_b12.g1)
ACCAG359127AG359128
length770730
length of high quality
(start - end)		324 (47 - 370)654 (77 - 730)
definitionCHROMAT_FILE: MSMg01no159_b12.b1 PHD_FILE: MSMg01no159_b12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:45 2005CHROMAT_FILE: MSMg01no159_b12.g1 PHD_FILE: MSMg01no159_b12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:45 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,437,210 - 73,437,529)(73,279,367 - 73,280,019)
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCCCATGAGTTTCCCTCTCTCCCTACCTGTACCTTCTGACTTGG
GAGTGTGTAGCTTCCAGGGAAGCGCTGTACTTGTCAGGACCTGTAAGTAA
GCAAATCTTTTTACTTTTATTTCGTGTCTCTCCTAACTGTTGAAGAGGTA
CTTCCATCTTACATTTAAAAGGCTGGAAAATGAGTGTTTCAGGAAGAAAA
TGTTAGGAAGGAATTATTACAGGCTTCTCGTTGCTGTGAGGTCACTTGGG
AATATAGGTAAAAGACAGAATTTGCAGAAGTAAACATGGTCATTAGTTCT
GTAATAGATTCTGGAAACAGACACAAGTAATACCCAGGCAATGAGTATAC
ATTGCTAAAATCTGTGTGTGTGTGAGTAAGTGTGTGTGTGTGTGTATTTG
TGTTATAAATTATACTTTTGATTTTTTTTATATTTTAGTTTTTAGGCTTA
CTTTTTTATTAATGACTAAGTTTTAGATCTTCATTTCTATATTTTTTCTG
CTTCTATTTTCTTTTTACCTTTTTCCTTTCTTTTATTTCCTTACCATTCT
CAGTTTTAATTTTTCTCATCACTCATACTTCCCATTATTATTTACTAATT
TTTCTCAACTCTCGTATCCTACCACACACAATGTTTCTTTTCTTTCCTAT
TTTATACTCTTTCCCCTCATTATATCTCCTCTCTCTTCTTTCTCTCCTCA
CTTTCACCATATCATAACCG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATCCAAACTCCTAGAAATGGCGG
GATCTACCTAATGCAAACAATAAGAAACAAGTCTAAAATCCAAACAGATA
ATAAAATAGATTTTCAAAAAATTAGTTTAGCTTGGACAATAAATAGGTCA
AAAATTTCAGGTGGTCAGATGAAAGAATTCTGTATAACAGTAAATCTGGA
ACACCCATCTGACGGGCGTGGGCTTTGGCTTCTTCACTGTCATAGCTGCT
ATCAGGAAAAGCTTCCATGTGTCCCATCATGATACAGAAAGAATTCCTTT
GGGAATGACACATCCCCCAGACCTGCATCCTGGCTCAAGCTCTCTAAATA
ATAAGCAGTCCCAAGCTTCCTGGGATAATGATCCTGTTGTGGCCATTAGG
AATTCAGAAATCTCAACCTGCCTAAAATATGAAATAGTTAAAAACTTGAA
TATAGAGATTACAAAGTCCTTAGAGCCTAATATTACAATTTGTGTTAAAT
GCAAGAACTTGTAATAGACACGTAAGAGTAAAAGTACTTATGTCAAAAGG
AATTTCTTACATGAGAAGTTCAAAAGTTAGTCTTATGCATTTTATTTAAG
AAATATGTTTGGATTTGGGCTTATTTAAAATGGAGATGAGGAAAATGTAC
TTAGATTATAATCAGTGTGATTCCTTTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no159_b12.b1 MSMg01no159_b12.b1 CHROMAT_FILE:
MSMg01no159_b12.b1 PHD_FILE: MSMg01no159_b12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:45 2005
         (324 letters)



>mm_chr14_73437006_73437729
          Length = 724

 Score =  611 bits (316), Expect = e-179
 Identities = 319/320 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcccatgagtttccctctctccctacctgtaccttctgacttgggagtgtgtag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 gaattctcccatgagtttccctctctccctacctgtaccttctgacttgggagtgtgtag 465

                                                                       
Query: 65  cttccagggaagcgctgtacttgtcaggacctgtaagtaagcaaatctttttacttttat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 cttccagggaagcgctgtacttgtcaggacctgtaagtaagcaaatctttttacttttat 405

                                                                       
Query: 125 ttcgtgtctctcctaactgttgaagaggtacttccatcttacatttaaaaggctggaaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 ttcgtgtctctcctaactgttgaagaggtacttccatcttacatttaaaaggctggaaaa 345

                                                                       
Query: 185 tgagtgtttcaggaagaaaatgttaggaaggaattattacaggcttctcgttgctgtgag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 tgagtgtttcaggaagaaaatgttaggaaggaattattacaggcttctcgttgctgtgag 285

                                                                       
Query: 245 gtcacttgggaatataggtaaaagacagaatttgcagaagtaaacatggtcattagttct 304
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 gtcacttggaaatataggtaaaagacagaatttgcagaagtaaacatggtcattagttct 225

                               
Query: 305 gtaatagattctggaaacag 324
           ||||||||||||||||||||
Sbjct: 224 gtaatagattctggaaacag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 724
Length adjustment: 9
Effective length of query: 315
Effective length of database: 715
Effective search space:   225225
Effective search space used:   225225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no159_b12.g1 MSMg01no159_b12.g1 CHROMAT_FILE:
MSMg01no159_b12.g1 PHD_FILE: MSMg01no159_b12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:45 2005
         (654 letters)



>mm_chr14_73279167_73280220
          Length = 1054

 Score = 1162 bits (601), Expect = 0.0
 Identities = 640/653 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   catccaaactcctagaaatggcgggatctacctaatgcaaacaataagaaacaagtctaa 60
           |||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 catccaaacttcaagaaatggcggggtctacctaatgcaaacaataagaaacaagtctaa 260

                                                                       
Query: 61  aatccaaacagataataaaatagattttcaaaaaattagtttagcttggacaataaatag 120
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 261 aatccaaacagataataaaatagatttttaaaaaattagtttagcttggacaataaatag 320

                                                                       
Query: 121 gtcaaaaatttcaggtggtcagatgaaagaattctgtataacagtaaatctggaacaccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtcaaaaatttcaggtggtcagatgaaagaattctgtataacagtaaatctggaacaccc 380

                                                                       
Query: 181 atctgacgggcgtgggctttggcttcttcactgtcatagctgctatcaggaaaagcttcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atctgacgggcgtgggctttggcttcttcactgtcatagctgctatcaggaaaagcttcc 440

                                                                       
Query: 241 atgtgtcccatcatgatacagaaagaattcctttgggaatgacacatcccccagacctgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgtgtcccatcatgatacagaaagaattcctttgggaatgacacatcccccagacctgc 500

                                                                       
Query: 301 atcctggctcaagctctctaaataataagcagtcccaagcttcctgggataatgatcctg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 501 atcctggctcaagctctctaaataataagcagtcccaagcttcctgggacaatgatcctg 560

                                                                       
Query: 361 ttgtggccattaggaattcagaaatctcaacctgcctaaaatatgaaatagttaaaaact 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttgtggccattaggaattcagaaatctcaacctgcctaaaatatgaaatagttaaaaact 620

                                                                       
Query: 421 tgaatatagagattacaaagtccttagagcctaatattacaatttgtgttaaatgcaaga 480
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct: 621 tgaatatagagattacaaagtccttaaagcctaatattacaatttgtgttaaatgcacga 680

                                                                       
Query: 481 acttgtaatagacacgtaagagtaaaagtacttatgtcaaaaggaatttcttacatgaga 540
           |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||
Sbjct: 681 acttgtaatagacacgtaagagtaaaagtacttataccaaaaggaatttcttacatgaga 740

                                                                       
Query: 541 agttcaaaagttagtcttatgcattttatttaagaaatatgtttggatttgggcttattt 600
           ||||||||||||||||| ||| |||||||||||||||||||||||| |||||||||||||
Sbjct: 741 agttcaaaagttagtctgatgtattttatttaagaaatatgtttgggtttgggcttattt 800

                                                                
Query: 601 aaaatggagatgaggaaaatgtacttagattataatcagtgtgattccttttc 653
           |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 801 aaaatggagatgaggaaagtgtacttagattataatcagtgtgattccttttc 853


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1054
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1044
Effective search space:   672336
Effective search space used:   672336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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