BAC Information

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BAC

Clone NameMSMg01-159H03
Chromosome14 (Build37)
Map Location 18,726,804 - 18,727,083
singlet/doubletsinglet
Overlap genenone
Upstream geneTpi-rs9
Downstream geneThrb, LOC627608, Nr1d2, LOC632287, Rpl15, Nkiras1, Ube2e1, LOC627717, LOC238963, Ube2e2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-159H03.T7 (MSMg01no159_h03.b1)MSMg01-159H03.TJ (MSMg01no159_h03.g1)
ACCAG359377AG359378
length770737
length of high quality
(start - end)
---280 (75 - 354)
definitionCHROMAT_FILE: MSMg01no159_h03.b1 PHD_FILE: MSMg01no159_h03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:11 2005CHROMAT_FILE: MSMg01no159_h03.g1 PHD_FILE: MSMg01no159_h03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTXXXXXXXXXXXXXXXXXXXXXXXNNATTCGNANNNNGANGNGGAANN
NNAGNNTTAGCAGCAGGGAGGGGGGNGGGAAGAGNNNNAGNANNNNAGGG
AAGANGAAGTTTTTGCAGAGAGAAGGAAGGNCNGGNANANAGAAGGGGNN
NAGGGGGAAGGGAGGANGANGGNAGGGGNGANAGGANANGANAAGGAAGA
GGNGNGAANNAGGNAANAAGGNGGANAAGGAAAGAAAAAAGGATTTTTTT
TAAAAAAAGAAAGAGAAGAAAAAGAAGGAAAGAAAAGAAAAGGAGAAGAG
GAAGAAATTTTAGATGATTTTGAAAAAGAAGAAAGAAAAAAAAAGAGATT
TTTTTTTTCCCCCCCCCCCCCCCCAAGAATTAATTTTATTTTTTCTTTGT
TTCTTTCCCCCCCAAAAAAAAAAAAAACATGCGCTCGGGGTGTGCCTTTT
TTTCTCCTTTCCTTCCCCTATCTTTCTCCCCTGTTTTTTTTCCTCATCCC
CCCATCCCCTTATCTCTTTTTCTTATTCTCTCCCTTCCTTTCTTTTCGCT
TTTCTTCCCCCCCCCCTCCTCCTCCCAGTTTCTGCACCCCCACACCTCCA
GCTTTTCTCCTTTCATTCCTTCTCCTCTCTTCCCTTCCGTTTCCCCTCCC
CTTCTTCGCCTCTTTTGCTCCTCCCTTTTTTTTTTTTCTTTCTTATCACC
ACAACCAGCCCTTTTTTTTCCCCTCTACGCCGNCTTCTACTCTCCTCCCT
TCTCTATCCTTCGCTCCCTN
ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGTTCTGGAGTCAGACACTTCATTTA
TTTATGTATGCATTTAGATTTTTTACAAAATCAAATCATTATTAAAAAAC
AAAACAAAACTGGAGCTCATCATGTTAAACAAAATAGCCAGATTCAAGAC
AAATGCTTCATACTGCCCTTGTGTTTGGTGTGAATGTAGAAGGGAGGGGG
GCTGCAGAAGGGAGAGGGACGAGAGAGGGCAGTGGGGATGTGTGTGAATG
TAAGTAAAGTATATGATACAATGCGAGCATGGGGACATTGTACTAAAACA
TATGATTTTTTACTGCCCCCCGCCCCCTCTCAAAAGCAATTGGCAGTAAC
TGGTGGCTGGCCATAAGAAGACATTTTCCTCAGTGGTATTACCTACCACT
GGTCAGTGACCCATGCTCCTATCAGTGACCTTATTAAACTTACTGGCTCA
CAGAACAAACAAAGAAACAAACAACAATGAAAATATGTGAAAGCAGAAGA
GTGTAGCTGAAAAGGGGGTACCTGTGGGAGGTGAGGAGGATAAAAGAAGG
TCATAGGGAATGAATTACATCAAAAGATAGTATATAGATGTATGATAATG
TCACAATAAAATGTGTTACTGTGTATACTTATATATACTACTGAAAAATT
TAATAAAAATTTTAAAGAAATCACCTGCCTATGTACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no159_h03.g1 MSMg01no159_h03.g1 CHROMAT_FILE:
MSMg01no159_h03.g1 PHD_FILE: MSMg01no159_h03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:11 2005
         (280 letters)



>mm_chr14_18726604_18727283
          Length = 680

 Score =  503 bits (260), Expect = e-147
 Identities = 275/280 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agttctggagtcagacacttcatttatttatgtatgcatttagattttttacaaaatcaa 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 480 agttctggagtcagacacttcatttatttatgtattcatttagattttttacaaaatcaa 421

                                                                       
Query: 61  atcattattaaaaaacaaaacaaaactggagctcatcatgttaaacaaaatagccagatt 120
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 420 atcattattaaaaaacaaaacaaaactggagctcatcatgttaagcaaaatagccagatt 361

                                                                       
Query: 121 caagacaaatgcttcatactgcccttgtgtttggtgtgaatgtagaagggaggggggctg 180
           ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 360 caagacaaatgcttcatactgcctttatgtttggtgtgaatgtagaagggaggggggctg 301

                                                                       
Query: 181 cagaagggagagggacgagagagggcagtggggatgtgtgtgaatgtaagtaaagtatat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 cagaagggagagggacgagagagggcagtggggatgtgtgtgaatgtaagtaaagtatat 241

                                                   
Query: 241 gatacaatgcgagcatggggacattgtactaaaacatatg 280
           ||||||||| ||||||||||||||||||||||||||||||
Sbjct: 240 gatacaatgggagcatggggacattgtactaaaacatatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 680
Length adjustment: 9
Effective length of query: 271
Effective length of database: 671
Effective search space:   181841
Effective search space used:   181841
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)