BAC Information

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BAC

Clone NameMSMg01-159L03
Chromosome14 (Build37)
Map Location 50,772,576 - 50,921,282
singlet/doubletdoublet
Overlap geneOlfr730, Olfr731, Olfr732, Olfr733
Upstream geneNat12, 1700011H14Rik, Slc35f4, 3632451O06Rik, LOC667006, Olfr722, Olfr723, Olfr724, LOC100041975, Olfr725, LOC100042882, Olfr726, Olfr727, Olfr728, Olfr729
Downstream geneOlfr734, Olfr735, Tlr11, Olfr736, Olfr737-ps1, Olfr738, Olfr739, Olfr740, Olfr741, GA_x5J8B7U07Q4-325-757, GA_x5J8B7TYL6J-3-280, Olfr742, Olfr743-ps1, Olfr744, Olfr745, Olfr746, Olfr747, Olfr748, Olfr749, Ttc5, Gm288, Rpph1, Parp2, Tep1, EG546611, Osgep, Apex1, Tmem55b, Pnp, LOC667034, LOC667210, Rnase10, Rnase9, Rnase11, Rnase12, Olfr750, GA_x5J8B7W5WBF-6267395-6266441, Rnase4, Ang1, Gm75, Rnase6, Rnase1, Ear5, Ear-ps1, Ang2, Ear14, Ear11, LOC100042187
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-159L03.T7 (MSMg01no159_l03.b1)MSMg01-159L03.TJ (MSMg01no159_l03.g1)
ACCAG359566AG359567
length757735
length of high quality
(start - end)		306 (50 - 355)606 (79 - 684)
definitionCHROMAT_FILE: MSMg01no159_l03.b1 PHD_FILE: MSMg01no159_l03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:28 2005CHROMAT_FILE: MSMg01no159_l03.g1 PHD_FILE: MSMg01no159_l03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,920,982 - 50,921,282)(50,772,576 - 50,773,181)
sequence
NAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTTGGAGTTTAGACTTCAAATTCCCAAAGCCCATTCTCCAT
TGCATCATAAATTACATCAAACTGTAAACAGCCCCTCTGATATAAAAAAT
TAATATTAAGTTGTAACAATTAGGTGTTGCCTATTTCATTTGAGGGGAAT
GGGGATGTTTGCTCTGTAAGAATATTGGTGCAGTTATTGAGGTAAGTGTT
CTTACTATTCTTCACATTTATAAAGAATAAAACAAACATGCAAAAATATA
ATTCCTTAGGTTGTATACTTACTATTTTGAATGCACAGAATGATTTATGA
ATGCCAAATTTATTTGTTTTCCCACCCCCCCCCCCTCTTTCTTCTTCAGA
TATTTGATTGTTTTATTTCCCCCCACAAAAAAAAAAAAAACACCTTTTCT
CGTTTCCCTTATCCATCCACTTATACCCTCCTTCCTTATGACCTTGAATC
CTCCATCACTTATCCACATGCCTTTCCTTCCCTTCATCATTTGTCATATT
ATATACCCCTCCCTACCACTTTTTTTTTTCACCTTCTACTTTTTTTTTTC
TTTTCTTATCTTTCTCCTCGACCCCTCCCTTACCCCTCTTCCATCCTATT
TTTACCTCTCCATTTCCCACTCTCCCCCCTCCTTCGCATCGCGCCTATTT
ATCTTCCCATTAACGCGGCCATTCTTCCTTATTATTTTCCATCTCTAAGT
CTCTATG

TTCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCATTTTTTAAATGTGGGTTT
AATTTCTTTCAATTAATGGTATTTATAGGTACCTTTTTGTTTTGTCAAAG
TGGAAAAGCCCATACATTTAGTTAAGTGACCACTTGAGGCTTTGGAGAAA
AGAATCCAAGGGTTATCTTCCAGTGGGGATTACCACTATTTTTCACAACA
CACTTTCTCACTGCAACAAAATTAATGGCATCCTTCACTGTAGGCAATTA
CATGAGCATTAGACAAAATGGATGTTCTTTTAGCTGCAAGGACAAATTTG
TGGAGTGAAGTGACTTTTATGAATTCTATGCAATGGATTTTCATAGGCAA
TTTCTACATAAACTATGCACAAAAGTACAACCTTTGTCCTACATGAAAAT
AATATTTACTTACAGATAGAAAGTAAACTACCTCAGCATGTGGAGATATT
GAAGAAAGTTTAATTAGTTACAAACCCAGAGAACATGATCTTTTATAAAG
AATTAGCACTTGAGAAAATTACTTTAGCTTTCAAATCTCATATAAGAAAA
TTGTTTCCTCTTTAAAACTTGTGAAAATCAAAAGAAATATGAAATGAATA
TTTATATGCTATGCCAATTAAAACATTTTATAATTTCTTTTCTTTTATTC
TTATTATACATAAAAATATAATTACAACATTGTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no159_l03.b1 MSMg01no159_l03.b1 CHROMAT_FILE:
MSMg01no159_l03.b1 PHD_FILE: MSMg01no159_l03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:28 2005
         (306 letters)



>mm_chr14_50920779_50921484
          Length = 706

 Score =  574 bits (297), Expect = e-168
 Identities = 300/301 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctttggagtttagacttcaaattcccaaagcccattctccattgcatcataaat 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ggaattctttggagtttagacttcaaattcccaaagcccattctccattgcatcataaat 445

                                                                       
Query: 64  tacatcaaactgtaaacagcccctctgatataaaaaattaatattaagttgtaacaatta 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tacatcaaactgtaaacagcccctctgatataaaaaattaatattaagttgtaacaatta 385

                                                                       
Query: 124 ggtgttgcctatttcatttgaggggaatggggatgtttgctctgtaagaatattggtgca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ggtgttgcctatttcatttgaggggaatggggatgtttgctctgtaagaatattggtgca 325

                                                                       
Query: 184 gttattgaggtaagtgttcttactattcttcacatttataaagaataaaacaaacatgca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gttattgaggtaagtgttcttactattcttcacatttataaagaataaaacaaacatgca 265

                                                                       
Query: 244 aaaatataattccttaggttgtatacttactattttgaatgcacagaatgatttatgaat 303
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 264 aaaatataattccttaggttgtatacttactatcttgaatgcacagaatgatttatgaat 205

            
Query: 304 g 304
           |
Sbjct: 204 g 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 306
Length of database: 706
Length adjustment: 9
Effective length of query: 297
Effective length of database: 697
Effective search space:   207009
Effective search space used:   207009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no159_l03.g1 MSMg01no159_l03.g1 CHROMAT_FILE:
MSMg01no159_l03.g1 PHD_FILE: MSMg01no159_l03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:28 2005
         (606 letters)



>mm_chr14_50772376_50773381
          Length = 1006

 Score = 1149 bits (594), Expect = 0.0
 Identities = 603/606 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcattttttaaatgtgggtttaatttctttcaattaatggtatttataggtaccttttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcattttttaaatgtgggtttaatttctttcaattaatggtatttataggtaccttttt 260

                                                                       
Query: 61  gttttgtcaaagtggaaaagcccatacatttagttaagtgaccacttgaggctttggaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttttgtcaaagtggaaaagcccatacatttagttaagtgaccacttgaggctttggaga 320

                                                                       
Query: 121 aaagaatccaagggttatcttccagtggggattaccactatttttcacaacacactttct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaagaatccaagggttatcttccagtggggattaccactatttttcacaacacactttct 380

                                                                       
Query: 181 cactgcaacaaaattaatggcatccttcactgtaggcaattacatgagcattagacaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cactgcaacaaaattaatggcatccttcactgtaggcaattacatgagcattagacaaaa 440

                                                                       
Query: 241 tggatgttcttttagctgcaaggacaaatttgtggagtgaagtgacttttatgaattcta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggatgttcttttagctgcaaggacaaatttgtggagtgaagtgacttttatgaattcta 500

                                                                       
Query: 301 tgcaatggattttcataggcaatttctacataaactatgcacaaaagtacaacctttgtc 360
           ||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||
Sbjct: 501 tgcaatggattttcataggcaatttctacataaactatgtagaaaagtacaacttttgtc 560

                                                                       
Query: 361 ctacatgaaaataatatttacttacagatagaaagtaaactacctcagcatgtggagata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctacatgaaaataatatttacttacagatagaaagtaaactacctcagcatgtggagata 620

                                                                       
Query: 421 ttgaagaaagtttaattagttacaaacccagagaacatgatcttttataaagaattagca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttgaagaaagtttaattagttacaaacccagagaacatgatcttttataaagaattagca 680

                                                                       
Query: 481 cttgagaaaattactttagctttcaaatctcatataagaaaattgtttcctctttaaaac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cttgagaaaattactttagctttcaaatctcatataagaaaattgtttcctctttaaaac 740

                                                                       
Query: 541 ttgtgaaaatcaaaagaaatatgaaatgaatatttatatgctatgccaattaaaacattt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttgtgaaaatcaaaagaaatatgaaatgaatatttatatgctatgccaattaaaacattt 800

                 
Query: 601 tataat 606
           ||||||
Sbjct: 801 tataat 806


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1006
Length adjustment: 10
Effective length of query: 596
Effective length of database: 996
Effective search space:   593616
Effective search space used:   593616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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