BAC Information

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BAC

Clone NameMSMg01-159O11
Chromosome14 (Build37)
Map Location 9,418,600 - 9,418,913
singlet/doubletsinglet
Overlap gene4930452B06Rik
Upstream geneLOC100042304, LOC100041881, LOC100042312, LOC100041893, ENSMUSG00000058570, EG666976, Flnb, Dnase1l3, Abhd6, Rpp14, Pxk, Pdhb, Kctd6, Acox2, BC055107, Oit1, LOC667005
Downstream geneLOC100041948, Fhit
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-159O11.T7 (MSMg01no159_o11.b1)MSMg01-159O11.TJ (MSMg01no159_o11.g1)
ACCAG359715AG359716
length737740
length of high quality
(start - end)
318 (45 - 362)284 (75 - 358)
definitionCHROMAT_FILE: MSMg01no159_o11.b1 PHD_FILE: MSMg01no159_o11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:43 2005CHROMAT_FILE: MSMg01no159_o11.g1 PHD_FILE: MSMg01no159_o11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAGGCTCCGACACGTGCTGGCTATGAGACCCTGATCAGATTTTCAG
TGTCTCTGAGCCCCTCACTAGTGGTAAGCAGTGAACCCTGACTCTCATTC
ACAGGACTAGTGGGAGGAGTACATGAGCAGCTCCGTAGAAATGATTGGCA
GGTTGTGGCACGTGATAGGAATCTCCATGTTTCTCTTCAGCACCATTCAT
TCCTGTTTATAGCTGTAGACCTAGAAATTCTCACTCCCGTGTAATAATGA
AACAAAATGAAATAAAAAGGCTTAACCAAAGCGTCTTTATACACTGATGA
CGTGATCACGTGTTTTACCCTCCCCCCCTACAGACAGCAGCTGAGCACAC
AAATGAATGCTGCCCCGCCTACCAACAAGGCCTGCACACCAAAATCAATT
GATCTCTCTATACCAGCAGCAAATGGACACAATATTAAATTACAGATATT
TCCAATTGTGTAAGAAGTACCAAGTACCCAAAAATCCTTTTTAAAAAGAT
ATACGTAAGTTATAAAATGCAAACTACAAACAATATGAGAAAAATTAGAC
ACGGTCTAAGTAATGCAGATAGATGTATTTCTTATGACTAGATTGGAAAA
CTCAATATTGTTTTTCCAAAATAAACCTTTAGATTCAATTTAATATAACC
AACTAACTAACTTTAAATATGGTAACTAGACAGACAG
CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATTTGCAATGTTAAAAAAAATGTTCT
TGCTGTCTTTTCTAAAAATCAGGGGGCTGGGGTCATGGGATATTGATTCA
TGGGACAATCAAAAGGGAACTTGGGTAATGACTGCATTGATATGTGAATA
AAAGACTGGGCTTTTGATCGGTGAGAGATGTGTGGAATTGCAAGAGATAG
ATGTCTTGAGAGAGAGAGAGCTGTCTGGAAAGCTGTCTCAAGCAGAACAT
AGGCTGTCACTTGGACCCACGATTTCACTTCCAGTTGTTTTCTGGCAGCT
TCCAGATACCTTTTTTTTCACACCCCCCCCCCCAAGCAGAGGCCGGTCCT
TGGCAATTTTGCATGCCCCCCCAACCCTTGATTAATTCATTTTCATTTTG
TAAACATGAAGATATTTGAGAGAGAAATTCATAACAAAGTATAATTTGAG
AAAAAGGATTAAAAGCTTATCAAGCACAAACATGGCTTTAAATAATGTAT
GATCCTTTGGACAGGAGCCCAAATCTGCTTGTGAAAAAAGGTACTTTCTC
TATTGAGCAATATTAAATGATATCAGGGGACTGCCATTAAATCCATCCAC
ACACCAATAACTTTTCCATTTCTAACGGTGTTCTCCTTATCAAAAACCTT
TATGAATAACAAAACCTGTCTGTTAATAAAACCTTTCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no159_o11.b1 MSMg01no159_o11.b1 CHROMAT_FILE:
MSMg01no159_o11.b1 PHD_FILE: MSMg01no159_o11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:43 2005
         (318 letters)



>mm_chr14_9418396_9419113
          Length = 718

 Score =  584 bits (302), Expect = e-171
 Identities = 311/314 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaggctccgacacgtgctggctatgagaccctgatcagattttcagtgtctctg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 gaattccaggctccgacacgtgctggctatgagaccctgatcagattttcagtgtctctg 459

                                                                       
Query: 65  agcccctcactagtggtaagcagtgaaccctgactctcattcacaggactagtgggagga 124
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 458 agcccctcactagtggtaagcagtgaaccctgaatctcattcacaggactagtgggagga 399

                                                                       
Query: 125 gtacatgagcagctccgtagaaatgattggcaggttgtggcacgtgataggaatctccat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 gtacatgagcagctccgtagaaatgattggcaggttgtggcacgtgataggaatctccat 339

                                                                       
Query: 185 gtttctcttcagcaccattcattcctgtttatagctgtagacctagaaattctcactccc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 gtttctcttcagcaccattcattcctgtttatagctgtagacctagaaattctcactccc 279

                                                                       
Query: 245 gtgtaataatgaaacaaaatgaaataaaaaggcttaaccaaagcgtctttatacactgat 304
           |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||
Sbjct: 278 gtgtaataatgaaacaaaatgaaataaaaaggcagaaccaaagcgtctttatacactgat 219

                         
Query: 305 gacgtgatcacgtg 318
           ||||||||||||||
Sbjct: 218 gacgtgatcacgtg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)