BAC Information

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BAC

Clone NameMSMg01-160A23
Chromosome14 (Build37)
Map Location 100,197,459 - 100,197,766
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043787, 2410129H14Rik, 6720463M24Rik, Dis3, D14Ertd581e, LOC100043395, LOC100043397, Klf5, LOC100043400, LOC100043789, LOC668671, LOC668672
Downstream geneEG546623, Klf12, LOC100043413, EG668683, EG668684
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-160A23.T7 (MSMg01no160_a23.b1)MSMg01-160A23.TJ (MSMg01no160_a23.g1)
ACCAG359830AG359831
length731731
length of high quality
(start - end)
313 (45 - 357)288 (77 - 364)
definitionCHROMAT_FILE: MSMg01no160_a23.b1 PHD_FILE: MSMg01no160_a23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:55 2005CHROMAT_FILE: MSMg01no160_a23.g1 PHD_FILE: MSMg01no160_a23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTAGTATTTAAGCCACCTAATTAGTGATATGTTGTTATGGACTCCC
TAGTATGTTTATATTTGAAACATTAGTTCCACTCAGTGATTGAAGTGTTC
TTAGGGGGTTCTGAGACATTTGTTACTCTTGACTAGATTTGTGTTTGGAG
TCAGTGGCAAGCTCCATTTATATATAGCCCATGGCTCCTGAGATATATTT
TCTGCCACCCTTTGAAGATTGGGTATGTACATATACTCAACCGCCCAGAA
GTTCAGTTCCTGTGGATGAACGTGAGCTCCGTCTGTATCCTGGATGTAAT
CTGTACTTTTTTGACACCCACACCCCTTAGGGTAATTACATATTGTCTTT
CTGCCTCTTAACCCACCTCGAAATTCTGTTGTTTCTTCTCAGGTGCTTTT
CTTCTTTCTAGCCAATCACATTGACGGAGATGATAAAGGCAAATATGAAC
ATGAACAAGTTTGTCGTCTCTCCATAGTCTTTCAAAACTGGTTCATATGT
GAAACTGTTTTTCTTATCCTGAATATAGATTCATCTGCAGTCTTTTGAAT
TATTGTTAGTTTTCTTTTAACATGGGTTTTATCTGGTCTAGGTGATACAA
CATGAATTTAGAAAATTAATAANATGATATAGGTAAAGGAAGAAAAAAGA
AAAGAAAGAGCAAAGAAGGAAAGGGAGCAAG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCA
GAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGGAATGCA
AATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGATGGGATTGCAGGCTTGTACAACCACTCTGGAA
ATCAGTCTGGCGGTTCCTCAGGAAATTGGACATAGTACTACCGGAGGATC
CAGCAATACCTTTTTTGGGCACACACCCCCAAGATGCCCCAACTGGTAAG
AAGGACACATGCTCCACCACGCTCATAGAAACCTTATTTATAATAGCTAG
AAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACGGAAAA
TGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAA
TTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAG
TGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAA
GTGGATATTAGCCCCAAACCTAGGATACCCAAGATATAAGATACAATTTG
CTAAACACATGANACTCAAGAAAAATGAAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no160_a23.b1 MSMg01no160_a23.b1 CHROMAT_FILE:
MSMg01no160_a23.b1 PHD_FILE: MSMg01no160_a23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:55 2005
         (313 letters)



>mm_chr14_100197198_100197910
          Length = 713

 Score =  572 bits (296), Expect = e-168
 Identities = 305/308 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctagtatttaagccacctaattagtgatatgttgttatggactccctagtatgt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 gaattcctagtatttaagccacctaattagtgatatgttgttatggactccctagtatgt 510

                                                                       
Query: 65  ttatatttgaaacattagttccactcagtgattgaagtgttcttagggggttctgagaca 124
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 509 ttatatttgaaacattagttccactcagtgattgaagtgtttttagggggttctgagaca 450

                                                                       
Query: 125 tttgttactcttgactagatttgtgtttggagtcagtggcaagctccatttatatatagc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 tttgttactcttgactagatttgtgtttggagtcagtggcaagctccatttatatatagc 390

                                                                       
Query: 185 ccatggctcctgagatatattttctgccaccctttgaagattgggtatgtacatatactc 244
           ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 389 ccatggctcctgagacatattttctgccgccctttgaagattgggtatgtacatatactc 330

                                                                       
Query: 245 aaccgcccagaagttcagttcctgtggatgaacgtgagctccgtctgtatcctggatgta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 aaccgcccagaagttcagttcctgtggatgaacgtgagctccgtctgtatcctggatgta 270

                   
Query: 305 atctgtac 312
           ||||||||
Sbjct: 269 atctgtac 262


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)