Query= MSMg01no160_f04.b1 MSMg01no160_f04.b1 CHROMAT_FILE:
MSMg01no160_f04.b1 PHD_FILE: MSMg01no160_f04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:26:15 2005
(323 letters)
>mm_chr14_111989665_111990388
Length = 724
Score = 478 bits (247), Expect = e-139
Identities = 283/295 (95%), Gaps = 1/295 (0%)
Strand = Plus / Minus
Query: 6 aattccataatgtcatattttattgcatgtctcaaagagtcaaggaagccatgttaatat 65
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 500 aattccataatgtcatattttattgcatgtctcaaagagtcaaggaagccatgtcaatat 441
Query: 66 tttcttctgtacctttt-ttggattccttaatacatttctgacctttatgtgatggcata 124
||||| ||| ||||||| | |||||||||||||||||||||||||||||||||||| |||
Sbjct: 440 tttctcctgcaccttttgtaggattccttaatacatttctgacctttatgtgatggaata 381
Query: 125 ggtcatatgaggttattcaatgttgccagaagaggggatggatcttctactgatagacta 184
||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ggttatatgcggtttttcaatgttgccagaagaggggatggatcttctactgatagacta 321
Query: 185 tcacaaaactagacatataatattacaaaccatatttctatggtaatgatcatttactat 244
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 320 tcacaaaactagacatataatattacaaaccatatttctatggtaatgatcttttactat 261
Query: 245 tgagagctggaaagtgttatccaactcaagtttagtgttttggctacaataaggt 299
|||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct: 260 tgagagctggaaagtgttatccaactcaagttcagtgttttggctacagtaaggt 206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 724
Length adjustment: 9
Effective length of query: 314
Effective length of database: 715
Effective search space: 224510
Effective search space used: 224510
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no160_f04.g1 MSMg01no160_f04.g1 CHROMAT_FILE:
MSMg01no160_f04.g1 PHD_FILE: MSMg01no160_f04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:26:15 2005
(538 letters)
>mm_chr14_111837139_111838076
Length = 938
Score = 984 bits (509), Expect = 0.0
Identities = 533/543 (98%), Gaps = 5/543 (0%)
Strand = Plus / Plus
Query: 1 ataattttaatctcaaaatgaactgtcattctcttagtgcttatgacatttcatatttta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 ataattttaatctcaaaatgaactgtcattctcttagtgcttatgacatttcatatttta 259
Query: 61 aaatgacataatctccagaaataaaatcctatgtttatctgttcttaatggaaaagtacc 120
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 260 aaatgacataatctccagaaataaaatcatatgtttatctgttcttaatggaaaagtacc 319
Query: 121 cactatctataaatatattcttaagctgttcacatgagaaacagttcatattaagactat 180
|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 320 cactatctataagtatattcttaggctgttcacatgagaaacagttcatattaagactat 379
Query: 181 ttactt-aagaaaaacacttatagaaatcagatgaaattattttattaatatttatctat 239
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ttacttaaaaaaaaacacttatagaaatcagatgaaattattttattaatatttatctat 439
Query: 240 atagaggtaaaaattatatttatagatgtgtatgatggcatattcctgttatcctactag 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 atagaggtaaaaattatatttatagatgtgtatgatggcatattcctgttatcctactag 499
Query: 300 gacgcaattggaaatttcagcccagcctatgacatagcaatgacttattaaaaacacagc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gacgcaattggaaatttcagcccagcctatgacatagcaatgacttattaaaaacacagc 559
Query: 360 aggaatggcatatatccataacccctgtaaatacagactcagggagatcactgtgatttc 419
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 560 aggaatggcatatatccataacccctgtaaatatagactcagggagatcactgtgatttc 619
Query: 420 taggccagcatggtctgtatcaatattttcaagtgcagcaaaatttcctcagaaaaactc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 taggccagcatggtctgtatcaatattttcaagtgcagcaaaatttcctcagaaaaactc 679
Query: 480 tgtctcataaaaaaaaa----aaaaaacaatccacatacattttatataccatgttatta 535
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tgtctcataaaaaaaaataccaaaaaacaatccacatacattttatataccatgttatta 739
Query: 536 ttc 538
|||
Sbjct: 740 ttc 742
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 938
Length adjustment: 10
Effective length of query: 528
Effective length of database: 928
Effective search space: 489984
Effective search space used: 489984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
