BAC Information

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BAC

Clone NameMSMg01-160M24
Chromosome14 (Build37)
Map Location 82,732,164 - 82,732,492
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC639207
Downstream genenone
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-160M24.T7 (MSMg01no160_m24.b1)MSMg01-160M24.TJ (MSMg01no160_m24.g1)
ACCAG360381AG360382
length708715
length of high quality
(start - end)
314 (46 - 359)323 (383 - 705)
definitionCHROMAT_FILE: MSMg01no160_m24.b1 PHD_FILE: MSMg01no160_m24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:52 2005CHROMAT_FILE: MSMg01no160_m24.g1 PHD_FILE: MSMg01no160_m24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTGTTTAGCTCTGTAACCCATTTTTAATAGGATTACTTAGTTCT
CTGGAGTCTACCTTCTAGAGTTCTTTGTGTATATTGGATATTAACCCTCT
ATCAGATATAGGCTTGTTAAAGATCTTTTCCCAATCTCTAGGATGCTGTT
TTTTCCTGTTGACAGTGTCCTTTAAGTTGCAGAACCTTTTCAATTTTATG
AGTTCCCAATTGTCTAAGGTTGATTTTAGAGCCTGAGACATTGGTGTTCT
ATTCAGGAAATTTTCCCCTTTACAAATGCATTTGAGGTTTTGTTTGTTTG
TTTGTTGGTTTTATTCCCCCCCCCCCACTTTCTCTTCTATTAGATTCGGT
ATATCTGGTTCACCCCAAAAAAAAAAATACACTTGGACTTGAACTTTCTG
CAAGGTGATAAATATGGATCAATTTGCATTCTCATACATGCAACCCTACA
TTCAGACTAGCAGCATTTGTTGAAGATACATTCTTTTTTCCATGGCATGC
TTTGGCTTCTTCTTTAAAGATCTAGTGTCCACAGGCGATATGTTTTTTTT
CTCGCACTTTCATTTCTCTCTCACGCTTGACCCCACTGCCTTTTTTTCCC
CTTCTTCCTCTTCCTCAACTCTCTCTTCTTTAGCCCCCCTCTCTTTTTTC
TGTTTTTA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCTTGTTGCACTATGTGGAGGGTA
TTATGTAATGCAGGAGTTTTTATAATGTCTCCAGACAATGTGTATCATTT
AGCTGTCAGCTAAATATTGATTTCAACCAAAATGAATGTTAGCTGTGATT
TTTCAAGGACACAAAGGGAAAAATGTAAAAGATGAAAATATGGAAACTTG
CTCATTGTGGAACAGTTCTAAAACTCCACTGTGCTATCCCAGAACTTAAT
TATATAGAATTGACTGAATTTCGGATGTGGCACTTTTATTGAGTATACAG
AGTCTATTTGAGATATACATGCCGCTCAAAAAGAACTATATCAGCCAGTT
CCTCAGAAAGACACATTGACACAATATTATTAAATCAAAGTGGTTTGCTG
TTCTTCAGTTGAACAGATTTATACCTACAACTGAATATTATTTTACATTT
TGTACAATTCCTAAAATCAAGGAAAAAGCCCTTTATTAAAGTTTTTATTT
AAGTAAATTTAATGTTAGTCTACTCACACGTTTATTTTATACCACAACAT
CCACATGATAAATTATTTAACACTATAGCATTGCCAATACTTTTGAGAAA
TTTTTCCTACATTGAAATTATCACGCCACATTAAGATAAACAACTAGCAT
TCAGTAAATTCATTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no160_m24.g1 MSMg01no160_m24.g1 CHROMAT_FILE:
MSMg01no160_m24.g1 PHD_FILE: MSMg01no160_m24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:26:52 2005
         (323 letters)



>mm_chr14_82731964_82732692
          Length = 729

 Score =  571 bits (295), Expect = e-167
 Identities = 318/329 (96%), Gaps = 6/329 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaactatatcagccagttcctcagaaagacacattgacacaatattattaaatcaaagtg 60
           ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 201 gaactatatcagccagttcctcagaaagacacattgatagaatattattaaatcaaagtg 260

                                                                       
Query: 61  gtttgctgttcttcagttgaacagatttatacctacaactgaatattattttacattttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtttgctgttcttcagttgaacagatttatacctacaactgaatattattttacattttg 320

                                                                       
Query: 121 tacaattcctaaaatcaaggaaaaagcccttta------ttaaagtttttatttaagtaa 174
           |||||||||||||||||||||||||||||||||      ||||| |||||||||||||||
Sbjct: 321 tacaattcctaaaatcaaggaaaaagccctttattaaatttaaaatttttatttaagtaa 380

                                                                       
Query: 175 atttaatgttagtctactcacacgtttattttataccacaacatccacatgataaattat 234
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 381 atttaatgttagtctactcacaagtttattttataccacaacatccacatgataaattat 440

                                                                       
Query: 235 ttaacactatagcattgccaatacttttgagaaatttttcctacattgaaattatcacgc 294
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 441 ttaacactatagcattgccaatacttttgagaaatttttcctacattgaaattatcatgc 500

                                        
Query: 295 cacattaagataaacaactagcattcagt 323
           |||||||||||||||||||||||||||||
Sbjct: 501 cacattaagataaacaactagcattcagt 529


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 729
Length adjustment: 9
Effective length of query: 314
Effective length of database: 720
Effective search space:   226080
Effective search space used:   226080
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)