BAC Information

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BAC

Clone NameMSMg01-161F10
Chromosome14 (Build37)
Map Location 44,527,076 - 44,527,449
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666415, LOC100040976, LOC100040983, LOC100042114, LOC666370, EG666376, LOC100041025, EG666396, LOC100041046, LOC100042130, LOC624893, LOC100041069, EG666420, LOC666436, EG638353, LOC666454, LOC100041106, EG638262, EG640992, EG666471, LOC666481, LOC100041143, EG666485, 1700049E17Rik, LOC666492, 1700001F09Rik, LOC673380, LOC100042326, EG666502, LOC545039, LOC100041227, LOC100041235, LOC100042342, LOC666322, EG666556, EG666561, LOC676304, Rbmxrtp, LOC673132, LOC100041300, LOC624717, LOC672977, EG666590, LOC100041327, EG623592, Ear1, Ear-ps12, Ear-ps9, Ear-ps8, Ang-ps3, Ear10, EG666451, LOC672161
Downstream geneAng3, Ear-ps7, Ear-ps10, EG630952, EG666621, LOC100041356, LOC100041364, LOC100041371, LOC100041376, Ear-ps2, Ang-ps1, Ear2, LOC100041393, LOC100041422, EG666638, 4930503E14Rik, EG666647, EG624862, EG666660, EG666667, EG546250, EG666675, LOC100041494, LOC100041497, EG666678, LOC676402, BC061237, LOC434476, EG666707, LOC100042570, LOC666723, LOC673290, EG666725, EG624966, EG666744, Ptgdr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-161F10.T7 (MSMg01no161_f10.b1)MSMg01-161F10.TJ (MSMg01no161_f10.g1)
ACCAG360767AG360768
length1,2351,246
length of high quality
(start - end)
369 (27 - 395)381 (71 - 451)
definitionCHROMAT_FILE: MSMg01no161_f10.b1 PHD_FILE: MSMg01no161_f10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:27:50 2005CHROMAT_FILE: MSMg01no161_f10.g1 PHD_FILE: MSMg01no161_f10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:27:50 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NNTTGTATGCGCGCTAAGACTCACTAAGGGAGAGGATCCGCGGAATTCTC
TGCTATAGTCTGACCAATTCCAAGTGAGTGGTAAAATTGTTGGTCCAGTG
CCTGGAAGAGCTTTTGAGCTACTCCTTGAGACCTTTGAGACTAGTGGATA
AAACTTATACATTCCCATAAAAGGTATCACAAAAAAGAAGCATGGACTCT
TATCCTCCCCTAGCAGGCCACATCACTGAAGTCAGTTTCTCACAATTGAC
CATAGTTTGGCCCCTCATATGTGCCCACTTCTGGGATAAGTGTCTGTCTT
TACATTTATTTTACTATAAACCTGACATATTGCTTAGATAAGTTGGGCCA
GGCTGTCATGTCTAGTTATAACATCTTCTTTCCTTTTTCTGGGTTTTTTT
TATAGNATACTGGACTCCGGTCTGGTACCCTGGTGAAAGTTACTTTTTTT
ATTCCCCCCCCCCCCANNGGGNAGCCTGCCCCTAAAAAAAAAGAGGGGNC
CACCANNCNNNNGGNNCNCCNACCCNNGGGANANNNNNANANNCCCNANG
NCCCCNGGGNNANACNANGGANNCNGAGGCAGCAGCGAGCCACANNANGN
CACCAGAAGGNCAGNAGGCCCCACGGGNCNNNGGGCCAANNNNGGGGCAG
CCAAGNCAANNCCCGGGNGACCCCCGGCCCCAAGGGCGCCNCAAAGCCGA
CGCCCNAAGCACCGAAACCAAGAAACCCCCAGAGGAAGGCAAAGAGCCCC
CAGGAGAGCCCAGAACCCCCCCNAAANNNNAAAGCNCNNCCCGCCAGCAG
AGAGGAGCCCCCCCCCCGGAAAGACCAGAACANCCCCAAGGGCAGGACCA
AAGGCAAAGAGACACCCCCGAAAAGAGAAAACGGGACNCCCCCAACCCCA
AAAAAAAGGGCCAAAAAGCCCGGGGCCCAAACCACCCCCGCGGCAAANCC
GGCAGAAACCCCCGGGGCCCAGAAACCAACGGAAAAAGAAGGGGGACCCA
ACCCAGGCCCCCAGGGCCCCAAAGGCCCGACCCCGCCCCCCAAACGAAAC
AAACCCGCGCGAGGGGGGGGAAAACAAACAGAACCCCACCACAACAACCG
CACACNCCCCGCCCAACACACCCCCCCCACCCCACACCCACCCAAAGCAA
CACCCACAAAACACACANCGACGGCCGCAAAACAAACCCCACCCAAGCCA
CGCAAAAGACACACCAACCCGCCCCAGCAACGCCC
NNNGGCTGAAGTGAGGCTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXATTTCCAGACCTCCTGCTGTGTCCCTACTG
GAATTGAGTTCCCCCTGGATGGTTCACGACAGAAGCTCACAGGTTACAAG
CGATTTCCCCACTGCTTTCACACAGCAAGGCTAGTGCTAGTAATGTCAGC
CCAGGTCTGTCCTTTTTAAGGTATTATTTTATGTGTATAGATATTGTGCC
CTCATGTATGTGTGTGAACCACGTGTGTGCAGTGCCGTCAGGGGCTAGAA
CAAGGCAACAAGTGATTGTGAGCTGTCATGTGGGTGCAGGGAGTGGATGG
AGCTCGAATCCTCTGGAAGAGCAGCCAAGTGCACTTAACCACTGAGCCAT
CTCTCTAGCTCCACTGTCCTCCTTAAGATGGAATACTAGAAACGAAAGAT
TTTTTTTCCCCCCCCCCACTCTTGTAGAAAATATTGAAAAAAAAAAAGAG
GGTACCTGGATGTTGTGTTTTACCAAGCAGTCATCCCCCCCCCCAAAAAA
AAAGAGAGAATTTTTCAGCTACCCAAAGGTAGTGCCTTGTAAAAAGAAGC
TGATTTCTTCAATTAAATGAGCAGACATTCTCTGAGGAAACATTGGATTG
CTACAGATCTTGGAAGAACCCAGAACAATTAACAAGGTGATGTTATTCCT
GGAATGTGGAGAGCCGTGCCGTGAGCAATCGCCATTATAAAATGGCACTG
GCTTCCACTGCGCCTAACTAGTAAACAAGCCTTATGCGCAAGAGCAAGAG
TGAATTCCCGCCCAGTCACTGCCCATCTCGTGGCGTAATAATGGGGTGAA
GGGCGAACAACGAATTATGAGCTGTCACGCCCCATCAGGTGCTGAAACGT
CCCACTGTGCGCTTATTCATCAGCCGCCTTTTTCGGGTTCCGGTCCTTCC
TTATGTTTAAACAAAAAAACCTTTTCCTTTAAAACACCCCCGTTTCCTAA
TAACACCCTGCTCCCACAAATATAATTGTGTTCTAAATATTGCTTCTTAA
CATCTCCCTTTTTTTCTTCTTCCTCCCTTCTTTTCTATAATCCTCCCCTT
TTCCTCTTGTGTTCTAATTATTTTTCATATTTTTTATCTTTTCTCCTTCC
ATAACCTCTTGTTTTTTTCCCATTAATTCTTCTTTTAGTTCTAACCCTCT
CTGCTTTAGCTTTCTCTGTTCTTCCTCTTTATTCATTTTCTTCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no161_f10.g1 MSMg01no161_f10.g1 CHROMAT_FILE:
MSMg01no161_f10.g1 PHD_FILE: MSMg01no161_f10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:27:50 2005
         (381 letters)



>mm_chr14_44526876_44527656
          Length = 781

 Score =  524 bits (271), Expect = e-153
 Identities = 351/381 (92%), Gaps = 9/381 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttccagacctcctgctgtgtccctactggaattgagttccccctggatggttcacgac 60
           |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| || 
Sbjct: 201 atttccagccctcctgctgtgtccctactggaattgagtttcccctggatggttcaggat 260

                                                                       
Query: 61  agaagctcacaggttacaagc--gatttccccactgctttcacacagcaaggctagtgct 118
           |||||||||||| ||||||||  ||||  ||||||||||||||||| ||||||| |||||
Sbjct: 261 agaagctcacagcttacaagcaagatt--cccactgctttcacacaccaaggcttgtgct 318

                                                                       
Query: 119 agtaatgtcagcccaggtctgtcctttttaaggtattattttatgtgtatagatattgtg 178
           |||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||| 
Sbjct: 319 agtaatgtcagcccgggtctgtcctttttaaggtattattttatgtgtataggtactgta 378

                                                                       
Query: 179 ccctcatgtatgtgtgtgaaccacgtgtgtgcagtgccgtcaggggctagaacaaggcaa 238
           ||||| | ||||| ||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 379 ccctcctatatgt-tgtgaaccaggtgtgcgcagtgccgtcaggggctagaacaaggcaa 437

                                                                       
Query: 239 caagtgattgtgagctgtcatgtgggtgcagggagtggatggagctcgaatcctctggaa 298
           |||||||||||||| ||||||||||||||||||||||||    |||||||||||||||||
Sbjct: 438 caagtgattgtgagttgtcatgtgggtgcagggagtgga----gctcgaatcctctggaa 493

                                                                       
Query: 299 gagcagccaagtgcacttaaccactgagccatctctctagctccactgtcctccttaaga 358
           ||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |||||
Sbjct: 494 gagcagccaagtgcacttaacaactgagccatctctccagctccactgtcctccctaaga 553

                                
Query: 359 tggaatactagaaacgaaaga 379
           |||||||||| |||| |||||
Sbjct: 554 tggaatactaaaaaccaaaga 574


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 781
Length adjustment: 9
Effective length of query: 372
Effective length of database: 772
Effective search space:   287184
Effective search space used:   287184
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)