BAC Information

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BAC

Clone NameMSMg01-161H13
Chromosome14 (Build37)
Map Location 18,784,653 - 18,785,030
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneThrb, LOC627608, Nr1d2, LOC632287, Rpl15, Nkiras1, Ube2e1, LOC627717, LOC238963, Ube2e2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-161H13.T7 (MSMg01no161_h13.b1)MSMg01-161H13.TJ (MSMg01no161_h13.g1)
ACCAG360868AG360869
length1,2821,275
length of high quality
(start - end)
414 (41 - 454)380 (70 - 449)
definitionCHROMAT_FILE: MSMg01no161_h13.b1 PHD_FILE: MSMg01no161_h13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:28:07 2005CHROMAT_FILE: MSMg01no161_h13.g1 PHD_FILE: MSMg01no161_h13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:28:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNGGACACTGGGCGCTAXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TAGGATAATCAGGCCTACAAACAGAGACCTTGTCTCAAACAAAACAACAA
CAACAACAACAAAACCAAACAAACAAACAACAAGAACAACAACAACAAAA
TGCCCTCCAGACCAAAATAACACATTCCCAAATTTTAGGAGGCTGGAAAG
ATGGCTCTGCAGTTAAGAGCAGTGGCTGCTCTTCCTGAATACTTAGGTTT
AACTGCCAGCATCTACCCAGTGCTTCACAACTGTCTGTAACTCCAGTTCT
GGGATTCCAATGCCCTCTTTATTCTCCTTGAACACCACATACATGTGAGC
AAAATACCTATATACATAAAAGGGGGGTGGTGATGAGCCTCTGTGAGCAC
TGTTTTTTCTTTATGTCTTTGTGAATCCCTTCCTTGCCAAGCAGCACTTA
CTTTTTTTTCCCCCCCCCCCCTGGGTNTTTGGTAGAACTCAAAAAGAGAG
GGGAGATAGTATTCTTCAGGTTTCCATCTGTCCTGGAGCTGATCATGTGC
CTCCATACTCAAATACCGCTGGGAGAGAGCTGGTCTTCCAGGAGTGCCAA
CACAAATGTGAGCACAGGTAAGACCACCACTGGAGAGAGTTTACACTACC
AGCTTAACAACACACCTGAAAACTCTAGAACAAAAATGAGCAAATTCACC
CAAGAGGAGTAGATGGCAGGAAATAATCAAACTCAGGGCTGAAATCTACC
AAGTAGAAACAAAAAGAACTATACTAAGAATCTACCAAACCAGGAGCTGA
TTCTTTAAAAAAATCACCAAGAAAGATAACCCCTTAGCCAGACAAACCAT
AAGGGTCAGAGACTGTATCCTTATTTAGAAAATCAGAAATTGAAAGGGAG
ATCTTACAACAGCTTCTGAGGAAATTAAAAAAAAAACCTTCAAATTCTAT
TACAAATGCCTTATATTTACCCTACTGGGAAAATTTGATTTAATGGACAG
GTTTCTTTAACTAAATCTCATTCTCTCAACTTATTCTCGGATTTAAAAAA
CCTTCTTCTGTGTCCTCCAAAAAAAAAATAAGACATTATTATATATTCCT
CCCCCTTAAATTATCCATGACCAAATGTGGTTATTGGTATAATTCTCCTC
CCTTTTTTAAGTAATTGATACTTTGTACTCTCTCACTTTCCTCCCTCTAA
ATATTCAACATCTCTTTTCCTTCCTTCTCTCATCTTAATTATTTCCATTA
TATTCCTCCGAATGCAATATCTCAGATATCTT
NNGGAAGAAGGNAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAATGATCAGATGCAGTGTGAATTATAAAAGG
AAGCATATATTCCTAAGGATCAGGCCCGCTTGTGCTCCACGATGTGATTT
CTCTTCTTTCTGACCCTCTGACCAGTGCTCAGCACCAAGCCAGGATTCAT
GTTGTTTCTCCAATGAAAGGAATTCTGCTGTCTCTAAACACACCTTGTAT
TGATTTGCTTCTTAACTTTAGTTCAGGCTGTATGTTAAAATAGATGAAGA
CACTCATTTAACTGTTCTAAGCACATGTGTCTGTTTTGTTTGGTTTGTCT
CAATGTTGATTCTTTTCACTTTCTGGAAGAGTATCCTTGCAGTTTCTGTT
TTTTGCATAATATTTGAAGTTTCAATGCCCACAGGGATTTTTTTTTTTTT
TTTTTTTCCCCCCCCCCCCCNNANAGAAANTGCCTCAAAAAAAAAAGGGG
AGCCGCCTGACCTGGGAAAGATCTGTGTGTCTCTTAGGGCCTCCCAAGTC
TCACCCACAATGCACTGGAAGTCCCTGCTGGTGAAACAAGTTCATCTTGC
TGTGACAGGAAACCTAACTCTACATGTCCACATAGAGAACCCCAGGTTCA
ATTGGAGGCTAACTTAATAGGTAGGTGCTGGTAAAAGGATGACAACAACA
CGTTGTCAGGGACTGCCAGCCTGCACAGACTGTTTTCTCGACTTGCTGAA
CAAGGGTCCCAAATTCTCAGGGTTAATTTTTTTAATTTGTTCTCTGATAT
GGGTACTCCCTTGTCATACCTTTTTAGCTTATACTTCACTATCGCCTCAC
CTTCTGATAATTCTTTTTCTTTTTATACATGTTATAAAAATGTGACCTCT
AAGTGTTTGTTTTTTTCTTATAAATCCTAATATATATGTCAAATATTCCA
TTTTCTTTTTGATTTTTTTTTTTCTCTTTTTTTATAATATTATACATTTT
TTTCTATCTCTTTTATTTCTTTTTATTTATTCATATTATATCTTATTTTT
TTTTTATTCTATTTTTCTCTTTTTTCTATAATACTACTTCTATTATATTT
GTTCTCTCTTCTATTTTTTTTTTATCTTCTCTACTACAACTTATTTCATT
CTATTTTTCGTTCTTCTCACTTTCTTTTTNTTATTATTCTATCTTTTCAT
TAGTATATTTACTTTAATCTTTATATCATTATTATTTCTNTTATATCATC
TTCTTCTTTTTCATTTGATCTTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no161_h13.g1 MSMg01no161_h13.g1 CHROMAT_FILE:
MSMg01no161_h13.g1 PHD_FILE: MSMg01no161_h13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:28:07 2005
         (380 letters)



>mm_chr14_18784453_18785232
          Length = 780

 Score =  661 bits (342), Expect = 0.0
 Identities = 369/378 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatgatcagatgcagtgtgaattataaaaggaagcatatattcctaaggatcaggcccgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | 
Sbjct: 201 aatgatcagatgcagtgtgaattataaaaggaagcatatattcctaaggatcaggccagt 260

                                                                       
Query: 61  ttgtgctccacgatgtgatttctcttctttctgaccctctgaccagtgctcagcaccaag 120
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 261 ttgtgctccacgatgtgatttctcttctttctgaccctctgaccagcgctcagcaccaag 320

                                                                       
Query: 121 ccaggattcatgttgtttctccaatgaaaggaattctgctgtctctaaacacaccttgta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccaggattcatgttgtttctccaatgaaaggaattctgctgtctctaaacacaccttgta 380

                                                                       
Query: 181 ttgatttgcttcttaactttagttcaggctgtatgttaaaatagatgaagacactcattt 240
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgatttgcttcttaactttatttcaggctgtatgttaaaatagatgaagacactcattt 440

                                                                       
Query: 241 aactgttctaagcacatgtgtctgttttgtttggtttgtctcaatgttgattcttttcac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aactgttctaagcacatgtgtctgttttgtttggtttgtctcaatgttgattcttttcac 500

                                                                       
Query: 301 tttctggaagagtatccttgcagtttctgttttttgcataatatttgaagtttcaatgcc 360
           |||||||||||||||||||||||||||||  ||  |||||||||||||||||||||||||
Sbjct: 501 tttctggaagagtatccttgcagtttctggcttcagcataatatttgaagtttcaatgcc 560

                             
Query: 361 cacagggatttttttttt 378
           ||||| ||||||||||||
Sbjct: 561 cacagtgatttttttttt 578


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 780
Length adjustment: 9
Effective length of query: 371
Effective length of database: 771
Effective search space:   286041
Effective search space used:   286041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)