BAC Information

Click to search

BAC

Clone NameMSMg01-161J09
Chromosome14 (Build37)
Map Location 14,173,190 - 14,292,929
singlet/doubletdoublet
Overlap geneSynpr
Upstream geneFezf2, Cadps, EG432822, LOC100042022, LOC100042026, EG328354
Downstream geneA430083B19Rik, EG382844, LOC100042045, Gm281, Thoc7, Atxn7, Psmd6, Olfr720, LOC667125, LOC100042543, Olfr31, Il3ra, LOC627139, Olfr721-ps1, LOC667152
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-161J09.T7 (MSMg01no161_j09.b1)MSMg01-161J09.TJ (MSMg01no161_j09.g1)
ACCAG360952AG360953
length1,2671,220
length of high quality
(start - end)
420 (29 - 448)391 (72 - 462)
definitionCHROMAT_FILE: MSMg01no161_j09.b1 PHD_FILE: MSMg01no161_j09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:28:21 2005CHROMAT_FILE: MSMg01no161_j09.g1 PHD_FILE: MSMg01no161_j09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:28:21 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,292,525 - 14,292,929)(14,173,190 - 14,173,570)
sequence
NNAAGCACTGGGCCTATAGACTCACTAAGGGAGAGGATCCGCGGAATTCT
CCATAGAGCCTTGGGCAAGTCACCAAGCTTTGCTTTTTCCTTCTTCTTAA
AGAAATTAACTCAGAGTTTTTTGACCACATGAGATTGAGGCTGTAATTTG
TTTCCTTCTGGGATGATCACTCATACAGCAGGTCTAACCCTACAGCAAAG
ACAACTGATGCCCCTGCAGTTTCTACCATATATCACTTTATACCCCAGAA
TCTTTACAGGTGTAAGGTGACCATCTGAAACCACCCAGTTAATGCTGCTG
AGGTAGCAGGCCAAGGCTCCACCACCCTTGCCTCTACCACTCCTTGGTAA
ATGGCCTTTACTACTCAAAAATAGACTAAAAGAGAAAATGGTACACTGTT
TTTATATCTGCATTTTTCATTAAATGTTATAATTTTGAATGATTTTGATT
TTTTTTTCCCCCCCCCCCCGATATATTAGTGTGAATCAAAAAAAAGAGAA
TTTTGGCTGCNAGGCTTTAGACACATAATCACGTTTTAGGTGTCTGCCAG
TCATTTGCTAAAGGAGATATATTTTAATATTGTCTCATTTGTTGTTTGCT
AGAACATAATGAGATAAGATAAGATATCCAGAGTAGTAAAGTGTTGCACA
AAAGGGTAGATTCAGGGAGAAGCTCACAGATGCTCCACTACACAGAAGCA
GGGGGTAGTGACCGGGAGAAGCTTACAGGTGCTCCACAAGCTTCAAACAA
GCTGTAGCATTAAGAAAACTACCAATCTAAGAATCCTAACATTAAAAGAA
GAAATGCCACAGGAAGAATCAGCCAAAGGTAATTTGTAAGTGTCTGGCAA
TGTTTCTCTTCTGATAGAAAAGCAGTTTGGTGAAAGCTTTTGACAATTTA
AGTCGCCTTAACTTAAGGTAAAAAGTGGCTTCTGAATTCTATTGGGTAAA
GCCCTTAAAGCTATTAAATATTTCCCAATGAGATTTTCTCCCCATTGATG
ATATGTGAAACCCCTAATAAGGCTAGTGATGGTCATCCTTGTCTTATTTA
AATTTCTCATCTTCCAAAAAAAGGATACTTGTTTTTTCCTTTACTGGCAT
TTTGTCCAAATATCTTTTTTATAAATTATCTCCCTTTCCTTTTTATGATG
AACTATGTTAATTCCTACTCTTCTTTAATCTTCTCTTTGTTTTTTATTAT
ATTCTTCTTTTGTTATCTCTATATTTATTATACTCTCTATTTCCTTTCAT
TATTCTTTACTCTTTTT
NNNAATGCATGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXATTTGCACTTTCCCTTTAAGTCTGGAAGC
CTGGAGCCTCTTCTCTCTCTTTGGAAGGCTCTATAACATTGTTTATTCAG
GCTGCATATGCCACCACAATTATGTGACCTGCTTAGCATGACAGGCCTGA
GTCAGCCCAGTTCATATCAAATGCAACTGCTCTGTATTTAAAAGAAAGAA
CTCTGTGATGTACTAGCATGGCCCAAGAGCTTAATCACCGGGTTGGTGCT
CCAGGCTTTCTAACAGGCCTGCTCTCTCTGCCATTGACTCACAGTCGCGT
ATTTCCAAATGGACAAGGGAATGAAGACAAAAACAAAATTGCTGGTGACT
ATTATTAGCATCCAGGCATCCTGGAAAGAAAGGCAGCCCTTGGGTGCTGT
GATTTTTTTTCCCCCCCCCCCAGCGGNCATGCCAGATAAACAAAAGAGAA
GATGGCTGATGTGAGCTCTGGGGACTTATAGCTCATGGGTGCAATTCTGC
TTCCCTGGAGCTGAATCCTGGTTCTGTCATGCTTGAATAAACTTGACACA
TTTTTTTAGTGGTCTCTGTTTAAACATGAGCATTATATTGCTGAGCAGCA
GTGGTAGCTTTGACTGTGTGCATGTGTTTGTATGTTCGTATGTTCATGTG
TTCATGTGTTCCTATGTGTGTGTATGTGTGTGTGTTTCCCACCATTCATT
TATTACAGCCTCTACAAAAAATCCCTGTGTTCCCCATTTTAATTCCACAT
GTCCCATATGTGTTTGTGTATTTACTCATATACTTAATGTTTATTCATCC
TCCTCCTTTTTTCTCATTATATTCTCCAACTTCTTTTTTTTGTTTACTTT
CTTTTTTCTTTTTTAAACTTCTTTTTTTACATCTTCTTTTTTATATTTTT
ATTTTTTCTTCTTTTCTTCTTTTTCATATTTTCTCTATCTTCTAACTTTA
TTTTGTATTTTCATCTTTTTACATCCTATTTTTCCTTTATTCTTTCCTTC
TTATTTATATATTTCTACTCTTCTTCTATTATATATCTCTTTACTTATCT
TCTTTTTCCTATTTTTTAATTATATTTTTTCATTTTTTTTTTTCTATACT
TTTTCTTCTTTTGAATTTATCTTTTTCTTTATTTTATATATCTTTATTTT
TTTTTATTTTTCTCTACTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no161_j09.b1 MSMg01no161_j09.b1 CHROMAT_FILE:
MSMg01no161_j09.b1 PHD_FILE: MSMg01no161_j09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:28:21 2005
         (420 letters)



>mm_chr14_14292310_14293129
          Length = 820

 Score =  737 bits (381), Expect = 0.0
 Identities = 399/405 (98%)
 Strand = Plus / Minus

                                                                       
Query: 16  gaattctccatagagccttgggcaagtcaccaagctttgctttttccttcttcttaaaga 75
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gaattctccatagagccttgggcaagtcaccaagctttgctttttccttcttcttaaaga 561

                                                                       
Query: 76  aattaactcagagttttttgaccacatgagattgaggctgtaatttgtttccttctggga 135
           |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 560 aattaactcagagttttttgaggacatgagattgaggctgtaatttgtttccttctggga 501

                                                                       
Query: 136 tgatcactcatacagcaggtctaaccctacagcaaagacaactgatgcccctgcagtttc 195
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tgatcactcatacagcaggtctaaccctacagcaaagacaactgatgcccctgcagtttc 441

                                                                       
Query: 196 taccatatatcactttataccccagaatctttacaggtgtaaggtgaccatctgaaacca 255
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 taccatatatcactttataccccagaatctttacaggtgtaaggtgaccatctgaaacca 381

                                                                       
Query: 256 cccagttaatgctgctgaggtagcaggccaaggctccaccacccttgcctctaccactcc 315
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 380 cccagctaatgctgctgaggtagcaggccaaggctccaccacccttgcctctatcactcc 321

                                                                       
Query: 316 ttggtaaatggcctttactactcaaaaatagactaaaagagaaaatggtacactgttttt 375
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||
Sbjct: 320 ttggtaaatggcctttactactcaaaaatagactaaaagagaaaatggtacactgtaatt 261

                                                        
Query: 376 atatctgcatttttcattaaatgttataattttgaatgattttga 420
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 atatctgcatttttcattaaatgttataattttgaatgattttga 216


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 820
Length adjustment: 9
Effective length of query: 411
Effective length of database: 811
Effective search space:   333321
Effective search space used:   333321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no161_j09.g1 MSMg01no161_j09.g1 CHROMAT_FILE:
MSMg01no161_j09.g1 PHD_FILE: MSMg01no161_j09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:28:21 2005
         (391 letters)



>mm_chr14_14172990_14173780
          Length = 791

 Score =  714 bits (369), Expect = 0.0
 Identities = 378/381 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttgcactttccctttaagtctggaagcctggagcctcttctctctctttggaaggctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttgcactttccctttaagtctggaagcctggagcctcttctctctctttggaaggctc 260

                                                                       
Query: 61  tataacattgtttattcaggctgcatatgccaccacaattatgtgacctgcttagcatga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tataacattgtttattcaggctgcatatgccaccacaattatgtgacctgcttagcatga 320

                                                                       
Query: 121 caggcctgagtcagcccagttcatatcaaatgcaactgctctgtatttaaaagaaagaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caggcctgagtcagcccagttcatatcaaatgcaactgctctgtatttaaaagaaagaac 380

                                                                       
Query: 181 tctgtgatgtactagcatggcccaagagcttaatcaccgggttggtgctccaggctttct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctgtgatgtactagcatggcccaagagcttaatcaccgggttggtgctccaggctttct 440

                                                                       
Query: 241 aacaggcctgctctctctgccattgactcacagtcgcgtatttccaaatggacaagggaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aacaggcctgctctctctgccattgactcacagtcgcgtatttccaaatggacaagggaa 500

                                                                       
Query: 301 tgaagacaaaaacaaaattgctggtgactattattagcatccaggcatcctggaaagaaa 360
           ||||||||||||||||||||||||||||||  | ||||||||||||||||||||||||||
Sbjct: 501 tgaagacaaaaacaaaattgctggtgactaagaatagcatccaggcatcctggaaagaaa 560

                                
Query: 361 ggcagcccttgggtgctgtga 381
           |||||||||||||||||||||
Sbjct: 561 ggcagcccttgggtgctgtga 581


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 391
Length of database: 791
Length adjustment: 9
Effective length of query: 382
Effective length of database: 782
Effective search space:   298724
Effective search space used:   298724
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)