BAC Information

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BAC

Clone NameMSMg01-162A19
Chromosome14 (Build37)
Map Location 92,932,408 - 92,932,711
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665377
Downstream geneLOC638252, Pcdh9, LOC668566
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-162A19.T7 (MSMg01no162_a19.b1)MSMg01-162A19.TJ (MSMg01no162_a19.g1)
ACCAG361290AG361291
length686690
length of high quality
(start - end)
307 (50 - 356)279 (79 - 357)
definitionCHROMAT_FILE: MSMg01no162_a19.b1 PHD_FILE: MSMg01no162_a19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:29:20 2005CHROMAT_FILE: MSMg01no162_a19.g1 PHD_FILE: MSMg01no162_a19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:29:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCACCTAAAAGTTTTTAAAGGTGACTGATAATTTTGAAAAAGA
TATTATATTATCCCATTTCTTTTCATTTTGTTCCATTAGGCCTTGCTTTG
CAGACATGAGTATAATTAAACTGCGAGGTCAATTCATATTTTGCTTCTCA
GAATTCTCAAAGTACTCTGTGCAAAATCTCCAACAAAAAAATCAATGTCA
ATAAAATTCTCTTGACAAGTTCTACTGGTTAGAAGTGAGCATCCTGCTTT
GTTATGAACTATAATTGTGTTATGCTAATAATAGTAAAGTGTAATTAAAT
CTCTCTTTTTTTTTATACCCCCCCCACACGAGTAAATTAGTTCATACATT
TTAAACTATTATCATCATATTTATCATTATTTAAGAAGGGCAATAGATGT
ATTTATTTCCAAAAACGGGTATCTAATCAATAATATCAGGGTCATTTTAG
TTCAAAGTACTGTGTAGACAATGTATGTAATTCATTTTACATCGATATTT
CAAAACAGGAAATAATGTCCTTATACATATAGGAGCTCTTGGAGTAGTTA
ATATTAAATTTCAAAGTGATAAACAAGATAAACTCCTTTTCTCTGCGGCA
TTGAACTGTGCAATACAAATGGATAAACATGGACAT
AACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGG
CAGAGAAGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATG
CAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAA
GATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAG
GAACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGG
AAATCAGTGTGGCGGTTCCTCAGAAAACTGGACATAGTACTACCGGAGGA
TCCAGTTTTATTTCTCCCGCCCCCCCCCCCAGAAGATGCCCCAACAGGTA
AGAAGGACACATGCTCCACTATGATCATAGCAGCCTTATTTATAATAGCC
AGAAGCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAA
AATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATG
AATTTATGAAATTCTTAGCCAAATGGATGGACCTGGAGGGCATCATCCTG
AGTGAGGTAACACATTCACAAAGAAACTCACACAATATGTATTCACTGAT
AAGTGGATATTAGCCCCAAACCTAGGATACCCAAGATATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no162_a19.b1 MSMg01no162_a19.b1 CHROMAT_FILE:
MSMg01no162_a19.b1 PHD_FILE: MSMg01no162_a19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:29:20 2005
         (307 letters)



>mm_chr14_92932205_92932911
          Length = 707

 Score =  588 bits (304), Expect = e-172
 Identities = 304/304 (100%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcacctaaaagtttttaaaggtgactgataattttgaaaaagatattatattatc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 ggaattcacctaaaagtttttaaaggtgactgataattttgaaaaagatattatattatc 448

                                                                       
Query: 64  ccatttcttttcattttgttccattaggccttgctttgcagacatgagtataattaaact 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 ccatttcttttcattttgttccattaggccttgctttgcagacatgagtataattaaact 388

                                                                       
Query: 124 gcgaggtcaattcatattttgcttctcagaattctcaaagtactctgtgcaaaatctcca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 gcgaggtcaattcatattttgcttctcagaattctcaaagtactctgtgcaaaatctcca 328

                                                                       
Query: 184 acaaaaaaatcaatgtcaataaaattctcttgacaagttctactggttagaagtgagcat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 acaaaaaaatcaatgtcaataaaattctcttgacaagttctactggttagaagtgagcat 268

                                                                       
Query: 244 cctgctttgttatgaactataattgtgttatgctaataatagtaaagtgtaattaaatct 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 cctgctttgttatgaactataattgtgttatgctaataatagtaaagtgtaattaaatct 208

               
Query: 304 ctct 307
           ||||
Sbjct: 207 ctct 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 307
Length of database: 707
Length adjustment: 9
Effective length of query: 298
Effective length of database: 698
Effective search space:   208004
Effective search space used:   208004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)