BAC Information

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BAC

Clone NameMSMg01-162H24
Chromosome14 (Build37)
Map Location 102,905,208 - 102,905,495
singlet/doubletsinglet
Overlap geneLOC669278
Upstream geneTbc1d4, Commd6, Uchl3, Lmo7, LOC100043795, LOC545567
Downstream geneKctd12, LOC668699, Irg1, Cln5, Fbxl3, LOC100043441, Phr1, LOC100043797
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-162H24.T7 (MSMg01no162_h24.b1)MSMg01-162H24.TJ (MSMg01no162_h24.g1)
ACCAG361609AG361610
length696698
length of high quality
(start - end)
---292 (80 - 371)
definitionCHROMAT_FILE: MSMg01no162_h24.b1 PHD_FILE: MSMg01no162_h24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:29:53 2005CHROMAT_FILE: MSMg01no162_h24.g1 PHD_FILE: MSMg01no162_h24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:29:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGAAACTCAAAATTGCGGCCGCTCAANGANTATTANATTTCCCACCCNGA
NNGAANNNNNNNNTGATAACCNNAGCAGGAGAGAGNAAGAAAAGANAAAA
AAGGGGAAGAGAGGAAAGGATTTGGCCCANGAAAAAGAAAAGAAGAGAGA
GAANAGAANAAAGGAGAGGAAGAAAGGGNAAGAAAAAGAAAANAGGAGGA
AGGAGAAGGAGGAGAGGAAGAGGAGAAAGAGGGAGAGGGAAAAAAGGGGG
GGGTTTTTTTGGNTAGNANAANNANTATGGAAATGAGGGTGGAGGNTGGT
AAGAAAAAAGGAGAGAGTATTTAGTTGAATTTAAGGGAAGAAAGGGAAAA
GGGNAGAGAGGGAGTTTTTTTTTCCCCCCCCCCCCACCAACGCGAGNTCC
GCTATGTTCATAGCAGCCTAGTTTAGAATAAACAAAAATAAGGAANGAGC
CCAGATGGCCCCCAGCAGAGGAATGGATACAGAAAAGGTGGTACATTTAC
ACAAGGGAATACTACTCAGCTATTAAAAAATGAATTTATGACGTTCCCAG
GAAAATGGATGGACCCGGAGGGGATCATCCTGAGTGAGGTAACCCAATCA
TAAAGGAGCTCGCACAATAAGGACACCGGGATAAGCGGCCACAAAACCCC
ATTTTTTTTTTTTTTTTAGAGAGGAGAAAAAAGGTGCGAAAGGGGG
NAATCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXACCTCTGACTAGCCAAAGGTT
TGCTAACATCTAGAATCTGAAAAGAACAGTTGAAGTGGTGTTAAAGGAAA
GTGTGGATTCAATCAACAACTGAAATCGGGTATTCCTGCCCAGAGTGTGA
TGCATCCACATAGATTAGTCTCTTGCTGAATAAAGAATTTTAGTGTTTCT
CATGTGAACCACACAGTTCTCTTGTGGAGACAAACCAAGTTGGGACAGAC
TTGATTTCATTTTCCTTAGAAACAAGTACAAAAGAAATAATTTGAGGCCT
GGATAAAAATGTCTTATTTTTTATAATCCCCCCCCCCGCTTTCTGCAGAC
TCAACTCATTAAGCCATGAGTGATTGCAAATGATGAGAACAGATTCTCCT
GGCCAAAGATTTGGCTACTCAGGTTATCCTCAAGGGAAACTGGTAAACCC
AATGGTGGTATTTTTAGAACAAGAGGGCTGAAGGAGTCACCCAGGGTAGT
TCATTTGTTTGTGTGTAATAAGAATAGCATCACACTCCAAGCTGTCATTT
AATTCATAACCAAATGCCTGTGAATCAAATGATACTTTACTATGTGGAGT
CAATACAACAGCAAGAAGTGTTGGATGTCGGAGAAAGCTGTAGTAAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no162_h24.g1 MSMg01no162_h24.g1 CHROMAT_FILE:
MSMg01no162_h24.g1 PHD_FILE: MSMg01no162_h24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:29:53 2005
         (292 letters)



>mm_chr14_102905008_102905699
          Length = 692

 Score =  542 bits (280), Expect = e-158
 Identities = 286/288 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acctctgactagccaaaggtttgctaacatctagaatctgaaaagaacagttgaagtggt 60
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 acctctgactagccaaaagtttgctaacatctagaatctgaaaagaacagttgaagtggt 429

                                                                       
Query: 61  gttaaaggaaagtgtggattcaatcaacaactgaaatcgggtattcctgcccagagtgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 gttaaaggaaagtgtggattcaatcaacaactgaaatcgggtattcctgcccagagtgtg 369

                                                                       
Query: 121 atgcatccacatagattagtctcttgctgaataaagaattttagtgtttctcatgtgaac 180
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 atgcatccacgtagattagtctcttgctgaataaagaattttagtgtttctcatgtgaac 309

                                                                       
Query: 181 cacacagttctcttgtggagacaaaccaagttgggacagacttgatttcattttccttag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 cacacagttctcttgtggagacaaaccaagttgggacagacttgatttcattttccttag 249

                                                           
Query: 241 aaacaagtacaaaagaaataatttgaggcctggataaaaatgtcttat 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 aaacaagtacaaaagaaataatttgaggcctggataaaaatgtcttat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)