BAC Information

Click to search

BAC

Clone NameMSMg01-163G24
Chromosome14 (Build37)
Map Location 93,999,664 - 93,999,954
singlet/doubletsinglet
Overlap genePcdh9
Upstream geneLOC638252, LOC668566
Downstream geneLOC100043356
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-163G24.T7 (MSMg01no163_g24.b1)MSMg01-163G24.TJ (MSMg01no163_g24.g1)
ACCAG362240AG362241
length571731
length of high quality
(start - end)
74 (51 - 124)292 (74 - 365)
definitionCHROMAT_FILE: MSMg01no163_g24.b1 PHD_FILE: MSMg01no163_g24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:02 2005CHROMAT_FILE: MSMg01no163_g24.g1 PHD_FILE: MSMg01no163_g24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTTTTTNAATATCAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
TCCGCGGAATTCTTTAGTGCACACCTTTAATACTAAACAATGATATCTAA
TTGAGTGACTAATCAGAGAAAGATTGACAGAAAGACTTAGAGATTGATAC
TGCCAACTCTCAGAAGAAAAGTATTTTGAAGCACCAGAAGATGTAGCGTC
ATCAGTGGAATCAGGGATGCATGGAATGATTTACCTGACCCTACCCTCCG
GGGAGCCACCAAAGCCTTGAAAACGAAAATTAAAAGCCCCAAAGATTGGA
AAATTGGCCAAATTATTTTGAACCCAAACGGATTTTTTTTTTTTCCCCCC
CCCCCCCCCTTTGGGCCCCCCCCCTTTTGAAAAGAGTTTTTGCCCCCCAA
AACCCAAGAAAAAAACACCCCCCCCCCCCGGGTCCCCAAAACCTTCAAGG
GGGGGGTTTTTTTTTTTTAAAAAACCCCCCCGTGAAAAACCTTTTTTTTC
TGGGGGAAATGTGGTGTTTTTTTTTTCCCCCCACCCCTTTTTTGGGGAAA
AAAACCCCCCCTCCATATTTT
TTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATTCCTTTGCATCTTCTAGGGTTTTTT
GATCAGCAAGAAACCCCCATTAAAACGTAAATACTCCTGGGATATGAGGA
GCCTCAATCTTTCACGAGCTCTCTCTTAGCAGACTAGTTGGAATGAAACA
AGAAATAGAACAGAGATTTGGAAAAATTAATAGAGAAATACGATAAAGGG
ATCACAGCAGTAGAGAGGAGACCCTAAACTTGGAATTTCTATATTGGAAC
AAATTTACCCTAGATCGATTTTGAGTCCATGGGTGATTTATAAGAAAAAA
AAATGAAATTTTATTTTCAGACCCCGGCCTCCAGAAACAGAATTAAAACA
CTGCAGAACTAATTAAAGAATCATTATTTTTCAGAATTATTCTGCATTTG
GAAGAATTATCTAGACACTAAGGGATAGGACAGTATCCACTCTATTTCCT
TTAAGAAGTCCTGAGCAGCATTTTTTCCTCAAAGAATAAAGTCAAATCAT
TAATGGAAACAACAGGTGTCTATTAAAGGATCTGGGGAAATACTAATTCA
GATGATGCAAATATTAACGTATTAATTATATTAAAACAGAACCATGTAAT
AGCTGATATAGTTGTGTGTTCTCCAGAGTCACCAAAACTATGCCCTCTGA
GGCTGACGGTTCTGTCTTCTGCTGTGATTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no163_g24.g1 MSMg01no163_g24.g1 CHROMAT_FILE:
MSMg01no163_g24.g1 PHD_FILE: MSMg01no163_g24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:31:02 2005
         (292 letters)



>mm_chr14_93999464_94000156
          Length = 693

 Score =  555 bits (287), Expect = e-162
 Identities = 290/291 (99%), Gaps = 1/291 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   attcctttgcatcttctagggttttttgatcagcaagaaacccccattaaaacgtaaata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attcctttgcatcttctagggttttttgatcagcaagaaacccccattaaaacgtaaata 260

                                                                       
Query: 61  ctcctgggatatgaggagcctcaatctttcacgagctctctcttagcagactagttggaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcctgggatatgaggagcctcaatctttcacgagctctctcttagcagactagttggaa 320

                                                                       
Query: 121 tgaaacaagaaatagaacagagatttggaaaaattaatagagaaatacgataaagggatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaaacaagaaatagaacagagatttggaaaaattaatagagaaatacgataaagggatc 380

                                                                       
Query: 181 acagcagtagagaggagaccctaaacttggaatttctatattggaacaaatttaccctag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acagcagtagagaggagaccctaaacttggaatttctatattggaacaaatttaccctag 440

                                                              
Query: 241 atcgattttgagtccatgggtgatttataagaaaaaaaaa-tgaaatttta 290
           |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 441 atcgattttgagtccatgggtgatttataagaaaaaaaaaatgaaatttta 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 693
Length adjustment: 9
Effective length of query: 283
Effective length of database: 684
Effective search space:   193572
Effective search space used:   193572
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)