BAC Information

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BAC

Clone NameMSMg01-163K04
Chromosome14 (Build37)
Map Location 12,830,389 - 12,830,669
singlet/doubletsinglet
Overlap genePtprg
Upstream geneFhit, LOC667030, EG382843, LOC100042427, LOC667059, LOC100041996, LOC100042441
Downstream gene3830406C13Rik, EG667072, Fezf2, Cadps, EG432822, LOC100042022, LOC100042026
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-163K04.T7 (MSMg01no163_k04.b1)MSMg01-163K04.TJ (MSMg01no163_k04.g1)
ACCAG362376AG362377
length712713
length of high quality
(start - end)
314 (47 - 360)283 (78 - 360)
definitionCHROMAT_FILE: MSMg01no163_k04.b1 PHD_FILE: MSMg01no163_k04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:16 2005CHROMAT_FILE: MSMg01no163_k04.g1 PHD_FILE: MSMg01no163_k04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCAGAAGATTGAATCTCCGAGTTTAAGGAACACACATTTAATCTG
GGCTACGCCTTTCATCTGGGATTAAAGGTGTGGTGGAACACACCTTTAAT
CTGGGCTACACCTTCTGCTGGAGACAATATAAGGACATTGGAAGAAGGGA
GTCTAGCTCTTGCTCTTGCTCCTTCGCCTGCTTGCTGCGTGAGACTGAGT
AACTGCTAGATCCTTGGACTTCCATTCACAGCTGCGACTGAACAATTGTT
GGGCATTGGGCTGCCGACTGTAAGTCATCAATAAATTCCTTTACTATCTA
GAGACTATCTGTATTTTCTCCCCCCCTCGAGAACCCTGACTAATACAGTG
GCCATGTGAGAACACAAATTTTTCAAACCCTTTATGGTCTTTTTATTAAC
AAATGCATATCTAACGTGAATTTAAGGGAGTATGTTTTTCTTGAAAGCAA
TATAGAAATGTCAGCATGCCATACATAATTTTCTAAGCCCCCCTTTGTTA
GTACATAGAGTCTCTCATTGGGGGCACAGAGCTACCTGCACCCAGGCAGG
GAGGGCCCAGGACAGCATCTGGGGTTTACTGGGCGGTTATTACAAACAGA
TAAGGCTGTACTGCTTGACGAGAGTGTGAGTCTGGACAACTCTTTAACAT
CTTTTCCCTTCN
TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTTTGAGGTATCTAAACCGTA
GCGAATCACTGAATAGAAGTTTTGCTTAAGTATCTCCCAATGACATGCTA
AACTATACCTCTCTAACAAAATACAGAGTTCAAATGGCTTCCCTCAATGA
ACACTTTTGGTTTCTTTTTCCAAAGCAGTTTTCACTTTCTCCACTAAGTA
TCGGCCAAGTGAGTCAGCTCATCTACCCTTTGATAGACAGAACACATACT
CTGGCTGGTAAGGATATTTTTTTCTGTGCATAAAGTAGTGCCTGCCATAA
AGAAGGCACTGGTTGGTGTGACACAACCACTGAACCAACATGACATTAAT
CCCTTACTCATAAAACCTACAGGTAAGGACTAACAACGTCCCTACCAAAT
GCTGGACCTAGGCCTACATCTGTCTGAGGTGAAGTATGATCCAGCGCCCT
AGAGAACAGCTCTCAGCTAGGACCGCATCCAAGATGAAGAATATCACACT
GGATGTGCCCGCCAACTTCCCAGCTGGAAGTTCCAGCTTCTCCATTAGAG
AATGATAAATGCCACTGTCATAATCAAAATTTTTCTGTGGTTTTCAATGT
GCTGGCTTTTACGCTGAAAGCCAAAGCATTAATAAAGCGATTGAAGGAGT
TGGATTATAAGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no163_k04.g1 MSMg01no163_k04.g1 CHROMAT_FILE:
MSMg01no163_k04.g1 PHD_FILE: MSMg01no163_k04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:31:16 2005
         (283 letters)



>mm_chr14_12830189_12830869
          Length = 681

 Score =  513 bits (265), Expect = e-150
 Identities = 278/283 (98%), Gaps = 2/283 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctttttgaggtatctaaaccgtagcgaatcactgaatagaagttttgcttaagtatctcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ctttttgaggtatctaaaccgtagcgaatcactgaatagaagttttgcttaagtatctcc 422

                                                                       
Query: 61  caatgacatgctaaactatacctctctaacaaaatacagagttcaaatggcttccctcaa 120
           |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 421 caatgacatgctaaactatac--ctctaacaaaatacagagttcaaatggcttccctcaa 364

                                                                       
Query: 121 tgaacacttttggtttctttttccaaagcagttttcactttctccactaagtatcggcca 180
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 363 agaacacttttggtttctttttccaaagcagttttcactttctccactaagtatctgcca 304

                                                                       
Query: 181 agtgagtcagctcatctaccctttgatagacagaacacatactctggctggtaaggatat 240
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 303 agtgagtcagctcatctaccctttgatagacagaacacgtactctggctggtaaggatat 244

                                                      
Query: 241 ttttttctgtgcataaagtagtgcctgccataaagaaggcact 283
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 ttttttctgtgcataaagtagtgcctgccataaagaaggcact 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 681
Length adjustment: 9
Effective length of query: 274
Effective length of database: 672
Effective search space:   184128
Effective search space used:   184128
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)