BAC Information

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BAC

Clone NameMSMg01-164L08
Chromosome14 (Build37)
Map Location 121,929,653 - 121,929,965
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668835, LOC668837, Ranbp5, Farp1, LOC100043837, Stk24, Slc15a1, LOC100043577
Downstream geneDock9, LOC668843, Phgdhl1, Gpr18, Ebi2, Timm8a2, Tm9sf2, LOC621710, Clybl, 1700108J01Rik, EG328479, EG432907, Zic5, Zic2, ENSMUSG00000075465, LOC668847
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-164L08.T7 (MSMg01no164_l08.b1)MSMg01-164L08.TJ (MSMg01no164_l08.g1)
ACCAG363096AG363097
length725749
length of high quality
(start - end)
317 (50 - 366)343 (77 - 419)
definitionCHROMAT_FILE: MSMg01no164_l08.b1 PHD_FILE: MSMg01no164_l08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:38 2005CHROMAT_FILE: MSMg01no164_l08.g1 PHD_FILE: MSMg01no164_l08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCTCTGTCTTCTTATGTGGTATGTGACTTAGACCATTGTCC
ATGTTGTGTCCACCTTAGCAAATATAGGCAAATGACAATGCCTGCCCACC
ACCCTGTTCTCTCATCAGGAGGAAATGGAAGAATGGGGCTGCGCATCAAC
GGTTACCTGAGTTCCTGCTGTGTGGTACGTAGACTTCTGGAACATCAGAG
CAACCATTGTAAAAACAAGACTTAGCAAGATAGTGTCACCTTCCTTCTAG
ACTGTTCCACCTGAGCCTCCCTCTAGACAGCAGCTGTAAGCCACTGAAGC
CCATACTTACTCTCTTGTTTTCTTCCCCCCCCCTCCCCCCCAGCTCTCTC
CTCCTCTTCTTTCTCTTCCTCTTCCCCCACCTCCTCTCCCTCCTCCTCCC
TCCTCCTCTCCTTCCTCCTCTCCTTCTTCCTCCTCTCCCTCTTCCTCCCT
CTTCCTCTTCCTCCTCCTCTCCTTCCTCCTCCTCCTCCTCCTCCTCCTCC
CCCTCTCTTCTTTAGTGCTACCTTTGCTGATAACCTCACCATTTTGAGAT
ATTACAATAACTTTCAAACTTGCCTCTGATGCCATGTTGCCTCTCCTATA
TTACCTTTTCTAGATGGCGGCCTCAGTGTGCTTTCTGGGACCTGTATAGG
ACTATTCCCTATTCGGCTATATGTC
NCCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCAGCAGTACCCAAGAACCCCTTG
GACCAGCATTTGGGAACCATGAGTTTTAAGGATTAAACAATCAAATGACT
TCCCTGGTGACCTAACTCCCTGGAAAACAGGGTAGACATCAAGGCCACAG
CCTGCTGAGTTAAGATGCCATAGTGTGGGGCTGGAGAGATGGCTCAGAGG
TTAAGATCACTGACTGTTCTTCCGAAGGTCCTGAGTTCAAATCCCAGGTT
ATGGTGGCTCATAACCATCCATAATGACATCTGACACCCTCTACTGGTGT
GTCTGAAGACAGCTTCAGTGTACTTACATATAAATAATAAATATTTCAAC
TAACTAAATAAATAAATGTCCACACCAAAAAGATGCCACAGTGTAAATTT
TATGCATAGGCAGGGCTACTGAGGCCCTTGTCCATGGAGGAAATCCTGTT
CCTCATACAGTGTGAATAACAAGAAACCTGTGATATTTAGAGGCATAGTC
CGATTGTTCCTCTTTTCTTCCTCTCTTTTCCCCCTTCCTTTCTTTCGCTT
TTTTCCTTTTTCTTCTTCTTTTCCCTCCTCCCTCCTTCCCTCTTCTTTTT
CCCTCCTTCCTTCTCTTTTCCCTTTCTTTTCCCTTTCTTTTCCCTTCTCT
ATTTATCCTTCCCCTTCCAGTCCTCTCGCTTTATCCTCTATCTCCTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no164_l08.b1 MSMg01no164_l08.b1 CHROMAT_FILE:
MSMg01no164_l08.b1 PHD_FILE: MSMg01no164_l08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:38 2005
         (317 letters)



>mm_chr14_121929449_121930165
          Length = 717

 Score =  567 bits (293), Expect = e-166
 Identities = 308/313 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctctgtcttcttatgtggtatgtgacttagaccattgtccatgttgtgtccac 64
           ||||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 517 gaattctgtctgtcttcttatgtggtatgtgatttcgaccattgtccatgttgtgtccac 458

                                                                       
Query: 65  cttagcaaatataggcaaatgacaatgcctgcccaccaccctgttctctcatcaggagga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 cttagcaaatataggcaaatgacaatgcctgcccaccaccctgttctctcatcaggagga 398

                                                                       
Query: 125 aatggaagaatggggctgcgcatcaacggttacctgagttcctgctgtgtggtacgtaga 184
           |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct: 397 aatggaagaatggggctgagcatcaacggttacctgagttcctgctgtgtggcacgtaga 338

                                                                       
Query: 185 cttctggaacatcagagcaaccattgtaaaaacaagacttagcaagatagtgtcaccttc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 cttctggaacatcagagcaaccattgtaaaaacaagacttagcaagatagtgtcaccttc 278

                                                                       
Query: 245 cttctagactgttccacctgagcctccctctagacagcagctgtaagccactgaagccca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 cttctagactgttccacctgagcctccctctagacagcagctgtaagccactgaagccca 218

                        
Query: 305 tacttactctctt 317
           |||||||||||||
Sbjct: 217 tacttactctctt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)