Query= MSMg01no165_g19.b1 MSMg01no165_g19.b1 CHROMAT_FILE:
MSMg01no165_g19.b1 PHD_FILE: MSMg01no165_g19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:33:34 2005
(620 letters)
>mm_chr14_109708452_109709468
Length = 1017
Score = 1033 bits (534), Expect = 0.0
Identities = 581/602 (96%), Gaps = 11/602 (1%)
Strand = Plus / Minus
Query: 5 gaattcacagaattgtcactacacaaagataatgcttcgacaggaccactttagtggctg 64
|||||||||||||||| |||||||||||||||| |||||||||| |||||||||||||||
Sbjct: 591 gaattcacagaattgtgactacacaaagataatccttcgacaggcccactttagtggctg 532
Query: 65 aaaagagttttgaagatcaggtataaaaaggatattaaacttaagtcttattcaactatt 124
|||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 531 aaaagaattttgaagatcaggtataaaaaagatattaaacttaagtcttattcaactatt 472
Query: 125 tgagttgtggacatgaaagtgagaatccttggatgcggggagggggcgaggtgacagaaa 184
|||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||
Sbjct: 471 tgagttgtggacatgaaaatgagaatccttggacgcggggaggggg---ggtgacagaaa 415
Query: 185 aatgtaatccaagaacgataatctcaaaaagaataacacataaagagaaatccatgatcg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 aatgtaatccaagaacgataatctcaaaaagaataacacataaagagaaatccatgatcg 355
Query: 245 gagagtgagggtcagcctgaattattaagctaaatattaactagtaaacatttacaatga 304
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 gagagtgagggtcagcctgaattattaagctaaatattaactagtaaacatttacaatgg 295
Query: 305 agctcattaagacagaagatgcaacaaagcattatttaagtttctgaaacaaaattttaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 agctcattaagacagaagatgcaacaaagcattatttaagtttctgaaacaaaattttaa 235
Query: 365 ctcagcaaaaggaaaagaagtgcagtatattgaagtggaaatttaagggttttttttttg 424
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 ctcagcaaaaggaaaagaagtgcagtatattgaagtggaaatttaagggtttttttttt- 176
Query: 425 aaaagtcagttgtgttgggtgattgttttgctgggcaaaagacttgatgggatgttttcc 484
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 -aaagtcagttttgttgggtgattgttttgctgggcaaaagacttgatgggatgttttcc 117
Query: 485 tgaagtggacacaggtgtgaaaggctaagtgtgaaggagcatttcatggaagcagacaca 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116 tgaagtggacacaggtgtgaaaggctaagtgtgaaggagcatttcatggaagcagacaca 57
Query: 545 gatgaagggatgttctgctaaagccatcatgtgaggggatgcctgtaagaagcatgaagg 604
||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 56 gatgaagggatgttctgataaag------tgtgaggggatgcctgtaagaagcatgaagg 3
Query: 605 at 606
||
Sbjct: 2 at 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1017
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1007
Effective search space: 614270
Effective search space used: 614270
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no165_g19.g1 MSMg01no165_g19.g1 CHROMAT_FILE:
MSMg01no165_g19.g1 PHD_FILE: MSMg01no165_g19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:33:35 2005
(639 letters)
>mm_chr14_109562516_109563553
Length = 1038
Score = 1038 bits (537), Expect = 0.0
Identities = 614/640 (95%), Gaps = 3/640 (0%)
Strand = Plus / Plus
Query: 1 accatctactatgattagatatcaggacaatttaactgatgatctttggtctatagataa 60
|||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct: 201 accatctactctgactagatatcaggacaatttaactgataatctttggtctatagatga 260
Query: 61 aagtataagcatcagtaatacagtaaaaggcgggtaagattaaccactgctctgtgtgct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagtataagcatcagtaatacagtaaaaggcgggtaagattaaccactgctctgtgtgct 320
Query: 121 acaatgacaagaagaattcccactcatgagaaaaactatggggacaaaccagttaaagtg 180
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 321 acaatgacaagaagaattcccactcacgagaaaaactatggggacaaaccagttaaagtg 380
Query: 181 cacaattttgaatcttaataccataaccaactcaattttaaaaattggcatcttttctta 240
|| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 381 catgattttgaatcttaataccataaccaactcaattttaaaaatcggcatcttttctta 440
Query: 241 tatatgtctctgtgatttccatctgccttctctataatacatacatgtaaaagtatacat 300
|||||| ||||||||||||||| ||| || ||||||||||||||||||||||||||||||
Sbjct: 441 tatatgcctctgtgatttccatatgctttgtctataatacatacatgtaaaagtatacat 500
Query: 301 gatcgaggcaggtatcaatgaataatacatgtttctataaaaacacacaattttcctgta 360
||| |||||| ||||||||||||||||||||||||||||||||| | | ||||||||||
Sbjct: 501 gattgaggcat-tatcaatgaataatacatgtttctataaaaacatagacttttcctgta 559
Query: 361 tacatttttttcatatattaagaaa-tctagatgtagcaacattacatcagatcttgttc 419
||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||| |||
Sbjct: 560 tacatttttttcatatattaa-aaactctagatgtaacaacattacatcagatctttttc 618
Query: 420 attatgggtaaggaggcagaaataatagatgactaccagactcaaatataataatttagt 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 attatgggtaaggaggcagaaataatagatgactaccagactcaaatataataatttagt 678
Query: 480 gagaaagaaagagtgatttctcanaagagggccattcagtcgtaaaaagaatggtaagca 539
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||
Sbjct: 679 gagaaagaaagagtgatttctcaaaagagggccattcagtcataaaaagaatggtaaaca 738
Query: 540 aacttgctgtgataagcatgcacgtgaatgtgtgcatgaacatacaaacatatgcctact 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 aacttgctgtgataagcatgcacgtgaatgtgtgcatgaacatacaaacatatgcctact 798
Query: 600 ttctcagtctcctatactcatcttatttttaccattgttt 639
||||||||||||||||||||||||||||||| ||||||||
Sbjct: 799 ttctcagtctcctatactcatcttatttttatcattgttt 838
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1038
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1028
Effective search space: 646612
Effective search space used: 646612
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
