BAC Information

Click to search

BAC

Clone NameMSMg01-167A16
Chromosome14 (Build37)
Map Location 102,633,914 - 102,634,332
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC382936, Tbc1d4, Commd6, Uchl3, Lmo7, LOC100043795, LOC545567
Downstream geneLOC669278, Kctd12, LOC668699, Irg1, Cln5, Fbxl3, LOC100043441, Phr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-167A16.T7 (MSMg01no167_a16.b1)MSMg01-167A16.TJ (MSMg01no167_a16.g1)
ACCAG364678AG364679
length754733
length of high quality
(start - end)
421 (45 - 465)657 (77 - 733)
definitionCHROMAT_FILE: MSMg01no167_a16.b1 PHD_FILE: MSMg01no167_a16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:35:42 2005CHROMAT_FILE: MSMg01no167_a16.g1 PHD_FILE: MSMg01no167_a16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:35:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAACTAGTTCCTTTTGTCTCTTTCTGGGCTTTTTTACACTCTAGAT
GTGAACTCTGTCACTGACTTGTATCCTCATGGGCTCTATTTGAGAGAGAT
CTAGAATGATGGGTTTGATTGATCGTGTATTTGAACATTCAGAAGCCAAC
AATAACCTTCTTTTTACTCCATCTGTATCCTGTGAGTCAGTTTTTTCACT
TCAGTGATATGAAGCTGATGAGGAAGTGCCCAAGAACAACTTGTTATGGA
GGAGTTTGGAGTTTTCAGAATTCCTGATGTGACCCCACATCACTGGTGTT
CTTCTGGCTGGGTAAATATCACATCAAAAATTCATGAACACATGGAAATT
CATCAGGAATTGTGCGCATGTTCCCTGCCTAACAGCTGGAGGATCCACAA
GGTACAGATTTCTGTGGAAATGTTATTTTTTTCATACTGTATCCTTTACC
TCCCTTCTAAAATTTGACAACCACTGAGCTCCAGTGAACTTCTTGAACTA
TGTACTTAGACTGGATGAGAATTTTGCTATCTTTATAGTTTTCTAACTGT
ATCGTTCATTTTTGCTTGACACTCATTACTACACTTGCACTTCCCTGCAT
GTGTGTTTCCGCCTCTTTTTTTGTTATTTCTCTAGTCTGGCGATTCGCAT
ATTTATATTCCCATCCATTGTTCCCGTATTTCCCGTTTCTCTCCCTTTAT
CTCG
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAAAACCAGATAAAAATAATAATC
CATTAATAAATATATACAGATCTAAACAGAGAATTCTCAAGAAAGGAAAC
TTAAGGGGCTAAGAAATACTTAAAGACAAGTTTAACATGTGTATACAACA
GAGAAATGCACATCCAAACTACTTTGAGTTTCTCTGCAATTCCATCTTAT
ATCTGCCAGAATGGCTAACTGATAACAGAAGTACAACTCAGGCAAGTTCA
CAACACTAAGTGTTTACTTTAAAATATAGGAGAGATTTCAGATTAGTAAT
TTACTAGCATATACAAAACCCACAAAAATCTAGAACCAAAAGAAAAAATG
ATACACACAAGAAGTAGACACTAGAAAAAGTTTGGGACTGAAATCAATAA
AATAGAAATACACAAATAACAATAACAAAAAAAAAACAATACAAAGAACC
AATGAAAAAAAGACTAGGTTCTTTGAGAGAATCAGCAAGATTGACAAATC
CTTAGCCAAATTAATGATGGGAGAGAAGAGATCAAAATTAACAAAATTAG
AGACAAAAAGGAAATCATAACAACAGCCACCTAGGAAATCCAAAGAATCA
AAGACCTGAACTCCACCAAATTCAAAGTTTTTCAAAACAGAGTTTCTCTG
TGTAGTCCTGGCTGTCCTGGAACTCACTCTGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no167_a16.b1 MSMg01no167_a16.b1 CHROMAT_FILE:
MSMg01no167_a16.b1 PHD_FILE: MSMg01no167_a16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:42 2005
         (421 letters)



>mm_chr14_102633711_102634532
          Length = 822

 Score =  719 bits (372), Expect = 0.0
 Identities = 408/420 (97%), Gaps = 3/420 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccaactagttccttttgtctctttctgggc-ttttttaca-ctctagatgtgaa 61
           ||||||||||||||||| |||||||||||||||||| ||||||||| || ||||||||||
Sbjct: 204 ggaattccaactagttcattttgtctctttctgggctttttttacacct-tagatgtgaa 262

                                                                       
Query: 62  ctctgtcactgacttgtatcctcatgggctctatttgagagagatctagaatgatgggtt 121
           ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 263 ctctgccactgacttgtatcctcatgggctctatttgagagagatctagaatgatgagtt 322

                                                                       
Query: 122 tgattgatcgtgtatttgaacattcagaagccaacaataaccttctttttactccatctg 181
           ||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct: 323 tgattgatcatgtatttgaacgttcagaagccaacaataaccttctttttacttcatctg 382

                                                                       
Query: 182 tatcctgtgagtcagttttttcacttcagtgatatgaagctgatgaggaagtgcccaaga 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tatcctgtgagtcagttttttcacttcagtgatatgaagctgatgaggaagtgcccaaga 442

                                                                       
Query: 242 acaacttgttatggaggagtttggagttttcagaattcctgatgtgaccccacatcactg 301
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 443 acaacttgttatggaggagtttggagttttcagaagtcctgatgtgaccccacatcactg 502

                                                                       
Query: 302 gtgttcttctggctgggtaaatatcacatcaaaaattcatgaacacatggaaattcatca 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gtgttcttctggctgggtaaatatcacatcaaaaattcatgaacacatggaaattcatca 562

                                                                       
Query: 362 ggaattgtgcgcatgttccctgcctaacagctggaggatccacaaggtacagatttctgt 421
           ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ggaattgtgtgcaagttccctgcctaacagctggaggatccacaaggtacagatttctgt 622


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 822
Length adjustment: 9
Effective length of query: 412
Effective length of database: 813
Effective search space:   334956
Effective search space used:   334956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)