BAC Information

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BAC

Clone NameMSMg01-167E12
Chromosome14 (Build37)
Map Location 39,794,796 - 39,795,221
singlet/doubletsinglet
Overlap geneNrg3
Upstream geneLOC100041521
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-167E12.T7 (MSMg01no167_e12.b1)MSMg01-167E12.TJ (MSMg01no167_e12.g1)
ACCAG364822AG364823
length760732
length of high quality
(start - end)
524 (109 - 632)426 (76 - 501)
definitionCHROMAT_FILE: MSMg01no167_e12.b1 PHD_FILE: MSMg01no167_e12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:36:00 2005CHROMAT_FILE: MSMg01no167_e12.g1 PHD_FILE: MSMg01no167_e12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:36:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTTCCNNNNCCCTTTCACTTTTTTTTTCCTTACTTTCANACCTCTTTTT
CTACCCCTTTTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXCGCGGAATTCTGGCCTCCCAGCTCATTTCCAGAAACCCTTGC
ATAGTTCCGTTTGAGCTCGTTTCTGGATATTTGGTTTATCCTTTGGAGTT
TGGAGATATCTTAGCTATGGTTTCAATGTAGTGAAGATACTCCATGATCA
TGGCAAATCTTATAAAGGAAAACATTTAATCAGAGTTGGCTTACAACTTC
AAAGGTTTAGTCCATTATCGTTATGGCAGAAAGCATAGCAGCCTGAAGAC
CTACATGGTGCTAGAGGATGCTAGAGTTCTACATCTTGATCCCCAGGCAG
AAGGAAACTGTTTTTTTTTACCAGGTATAACTTAAGCATATATAACCCCA
AAAACCCTCCTCCACAGTAACACACTTACTCCAAAGGTCACATCTACTCC
AATAATAGCATATCTACTTCAACAAGGCCATACTTCCTAACAGGAATTGC
ACAATTCTTTAATAAAACAAGAACAAAAATCTTGTTGTATTTATTATTAC
TATCTAGCCTCATATAAAACAACTCCCTAAAACAATCACAAAAAAGAATT
TACAGTCAACAAAAGGCCCTATTACTACTTAGGGCACCTTCTTCTAACTT
AACATCTATGCTAATAGCCATAGGTATTCCCTGGGAGCATTTACAGATTT
TTAGTTCTGT
CGATTATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGAATAGAAATCAGGATTCACTCAT
TTCTGCTTTTTCTGTGCTGATAAAAGAAAAATAAAAGGGTTGCAGTTATA
AGTTCAAAGAACTATGTTAAAGTAATTTCAAATGACCAAACTCATAGTCT
GTGGGGTGCGCTATGACTGTTTATTACCAGAGAATGAGTGTAGCTTAGAT
ATTTAGCCATCAAGAAGTCTCACTTTCCCATTCTCATTGATTTGATATAT
CCATTGTAATTATGAACAAATTAATTTTGTAACCAATACACATCCTATGC
ATATTTTCAGTGACTAGAAGTTAATAAAAACAGGCGTTGATAGACACTTT
TAGAATGGCAGACCACTAGAATACTTCCTATGTAGACAAATAAATATTAT
AAGTTAATGGGATAGAAATGTCTTTACATGTAATATTACAGATAACATCT
AGTATGTAGATTCCTGAATATATATATGTATATAAATAAATATTTTCTTA
CTGTAAATTGCTCTCAACATTTCTATGAAATATTGACATTGTTACCCAAA
GTTGTTAATGTACCTAGAGTCTGACTTTATGAAGTCTATGACTTCCCAAC
TACCTTTGATTTATATGCGAAACATATTTTTTAGACATGTTGCTTAATAA
ATCCCTTTAGTTCTTTACCATATGTTGTCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no167_e12.g1 MSMg01no167_e12.g1 CHROMAT_FILE:
MSMg01no167_e12.g1 PHD_FILE: MSMg01no167_e12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:36:00 2005
         (426 letters)



>mm_chr14_39794596_39795421
          Length = 826

 Score =  777 bits (402), Expect = 0.0
 Identities = 420/426 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgaatagaaatcaggattcactcatttctgctttttctgtgctgataaaagaaaaataaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 tgaatagaaatcaggattcactcatttctgctttttctgtgctgataaaagaaaaataaa 567

                                                                       
Query: 61  agggttgcagttataagttcaaagaactatgttaaagtaatttcaaatgaccaaactcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 agggttgcagttataagttcaaagaactatgttaaagtaatttcaaatgaccaaactcat 507

                                                                       
Query: 121 agtctgtggggtgcgctatgactgtttattaccagagaatgagtgtagcttagatattta 180
           ||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 506 agtctgtggggtgtgctgtgactatttattaccagagaatgagtgtagcttagatattta 447

                                                                       
Query: 181 gccatcaagaagtctcactttcccattctcattgatttgatatatccattgtaattatga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 gccatcaagaagtctcactttcccattctcattgatttgatatatccattgtaattatga 387

                                                                       
Query: 241 acaaattaattttgtaaccaatacacatcctatgcatattttcagtgactagaagttaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 acaaattaattttgtaaccaatacacatcctatgcatattttcagtgactagaagttaat 327

                                                                       
Query: 301 aaaaacaggcgttgatagacacttttagaatggcagaccactagaatacttcctatgtag 360
           |||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 326 aaaaacagacgttgatagacacttttagaatgacagaccactaggatacttcctatgtag 267

                                                                       
Query: 361 acaaataaatattataagttaatgggatagaaatgtctttacatgtaatattacagataa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 acaaataaatattataagttaatgggatagaaatgtctttacatgtaatattacagataa 207

                 
Query: 421 catcta 426
           ||||||
Sbjct: 206 catcta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 826
Length adjustment: 9
Effective length of query: 417
Effective length of database: 817
Effective search space:   340689
Effective search space used:   340689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)